RnoINT0097143 @ rn6
Intron Retention
Gene
ENSRNOG00000059140 | Myo1g
Description
myosin IG [Source:RGD Symbol;Acc:1306016]
Coordinates
chr14:86785714-86786470:-
Coord C1 exon
chr14:86786304-86786470
Coord A exon
chr14:86785922-86786303
Coord C2 exon
chr14:86785714-86785921
Length
382 bp
Sequences
Splice sites
5' ss Seq
CAGGTACAA
5' ss Score
7.09
3' ss Seq
CCCACCATCGTGTCTTGTAGGTA
3' ss Score
9.29
Exon sequences
Seq C1 exon
GAGCCCTTCTATGTCCGCTGCATAAAACCCAACGAAGACAAGGTACCCGGACGACTCGATGAAGCCCACTGTCGTCACCAGGTCGAGTACCTGGGATTACTGGAGAATGTGAGGGTCCGCAGGGCTGGCTTTGCTTCCCGGCAGCCCTACCCTCGGTTCCTGCTCAG
Seq A exon
GTACAAGCTCCCACACCCGTTACAATGGGAGCCATGGCTTCTGTGTGGAACTTAGGGGATAGGAACAGAGAGACTAAATAACGTCTTGCATCATAACGCAGGTTAGAGCCAGTGCAGGTCCAGCCCCAAGGCACCAAAATGTCTGTGAGAAAATCTGGGGAAGACATGTACATGTGCAAGGTTAAATGTGAGGGCACAAGCAGCAGGCATAGGGAGAAACGTGGCGAGGGTTTGCCCACCATGCCATAGCTGTCCCAGAAGCATACTGGCATGATTTTAGCTCCGAGAATTCCTAGTACCTCTACATTCTTCCCAGGGCTGGCCAGGGAGGGGGACTCGTGTGTCCTTCCTGATGCCAAGTACCCACCATCGTGTCTTGTAG
Seq C2 exon
GTACAAGATGACCTGTGAGTACACATGGCCCAACCACCTGCTGGGCTCTGACAGGGAGGCGGTGAGCGCCCTTCTGGAGCAGCATGGGCTACAAGGGGATGTGGCCTTTGGTCACAGCAAGCTGTTCATCCGATCCCCAAGGACGCTGGTCACTCTGGAGCAGAGCCGAGCTCACCTGATTCCTATCATTGTGTTACTGCTGCAGAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000059140:ENSRNOT00000092021:15
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.018 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0006316=Myosin_head=FE(8.0=100)
A:
NA
C2:
PF0006316=Myosin_head=PD(6.4=62.9)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ATGTCCGCTGCATAAAACCCA
R:
TAGGAATCAGGTGAGCTCGGC
Band lengths:
342-724
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]