GgaINT0097034 @ galGal4
Intron Retention
Gene
ENSGALG00000005644 | MYO1G
Description
unconventional myosin-Ig [Source:RefSeq peptide;Acc:NP_001026132]
Coordinates
chr2:4044492-4044936:+
Coord C1 exon
chr2:4044492-4044658
Coord A exon
chr2:4044659-4044728
Coord C2 exon
chr2:4044729-4044936
Length
70 bp
Sequences
Splice sites
5' ss Seq
ACGGTACGG
5' ss Score
9.91
3' ss Seq
CTGACTCCCACTGTCTCCAGGTA
3' ss Score
10.04
Exon sequences
Seq C1 exon
GAGCCCTACTATGTGCGCTGCATCAAGCCTAATGACCAGAAGTCTCCAGTGCTGTTCGACGAGGAGCGGTGCCGGCACCAGGTTGCCTATCTGGGGCTGCTGGAGAACGTGCGTGTGCGCCGTGCCGGCTTCGCCTACCGCCAGCCCTACGACCGCTTCCTGCAACG
Seq A exon
GTACGGCCCCAGGAGCCCCGATGATTCCCCAGCCCTTGCACCCCATTGTGCTGACTCCCACTGTCTCCAG
Seq C2 exon
GTACAAGATGACGTGTGAATACACATGGCCCAACCACCTGATGGCCACTGACCGTGAGGCCACGCAGACCCTCCTGGAGCAGCATGGCTTTCAGGACGATGTGGCTTATGGCCACACCAAAGTCTTCATCCGCACGCCCCGCACGCTCTTCTGCCTTGAGCAGGAGCGGGCGCAGCTCATCCCCATTATTGTCCTGCTGCTGCAGAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000005644:ENSGALT00000009051:15
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0006316=Myosin_head=FE(8.2=100)
A:
NA
C2:
PF0006316=Myosin_head=PD(6.5=62.9)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CTATCTGGGGCTGCTGGAGAA
R:
ATCGTCCTGAAAGCCATGCTG
Band lengths:
181-251
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]