MmuINT0104278 @ mm10
Intron Retention
Gene
ENSMUSG00000020437 | Myo1g
Description
myosin IG [Source:MGI Symbol;Acc:MGI:1927091]
Coordinates
chr11:6510868-6511649:-
Coord C1 exon
chr11:6511483-6511649
Coord A exon
chr11:6511076-6511482
Coord C2 exon
chr11:6510868-6511075
Length
407 bp
Sequences
Splice sites
5' ss Seq
CAGGTACAG
5' ss Score
8.68
3' ss Seq
ATCATGTCCTGTGGCGACAGGTA
3' ss Score
6.31
Exon sequences
Seq C1 exon
GAACCCTTCTATGTCCGCTGCATCAAACCCAACGAAGACAAGGTGGCTGGGCGGCTCGATGAAGCCCACTGTCGTCACCAGGTCGAATACCTGGGACTATTGGAGAATGTGAGGGTCCGCAGGGCTGGCTTTGCTTCCCGGCAGCCCTACCCTCGATTCCTGCTCAG
Seq A exon
GTACAGGCTCCCACACCTGTTACAGTGTGAGCCATGGCTTCTGTGTGGAATTTAGGGGGTGGGAGCAGAGAGACCCTAAATAATGTCTTGCATCATAATACAAGTTAGGGCCAGTGCACCTCCAGGCCCAAGGCAACAAAATGTCTGTGAGAAAATCTGGAAAGATGTGTGTGTGTGTGAACACGTGTACAAGTGCAAGCTTAAATGTGAGGACACAAGCAGCAGGCATGGGAAGAAAGGTGGTGAGGGCGTGCCCACAGTGCCATGGTGGTCCCAGAACCATACTGGCATGACTTCAGCTCTGAGAATTCCTAGTCCCCCTACATTCTCCCCAGGGCTGGCAAGGGAGGGGGGACTCGTGTGTACTGCCTGATGCCAAGTACCACCATCATGTCCTGTGGCGACAG
Seq C2 exon
GTACAAGATGACCTGTGAGTACACGTGGCCCAACCACCTGCTGGGCTCTGACCGGGATGCGGTGAGCGCCCTGCTGGAACAGCATGGGCTGCAAGGGGATGTGGCCTTTGGCCACAGCAAGCTGTTCATCCGATCCCCAAGGACGCTGGTCACTCTGGAGCAGAGCCGAGCTCGCCTGATTCCCATCATTGTGTTATTGCTGCAGAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000020437:ENSMUST00000003459:15
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.009 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0006316=Myosin_head=FE(8.0=100)
A:
NA
C2:
PF0006316=Myosin_head=PD(6.4=62.9)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TATGTCCGCTGCATCAAACCC
R:
AATGATGGGAATCAGGCGAGC
Band lengths:
348-755
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types