GgaINT0097034 @ galGal3
Intron Retention
Gene
ENSGALG00000005644 | MYO1G
Description
NA
Coordinates
chr2:3961208-3961652:+
Coord C1 exon
chr2:3961208-3961374
Coord A exon
chr2:3961375-3961444
Coord C2 exon
chr2:3961445-3961652
Length
70 bp
Sequences
Splice sites
5' ss Seq
ACGGTACGG
5' ss Score
9.91
3' ss Seq
CTGACTCCCACTGTCTCCAGGTA
3' ss Score
10.04
Exon sequences
Seq C1 exon
GAGCCCTACTATGTGCGCTGCATCAAGCCTAATGACCAGAAGTCTCCAGTGCTGTTCGACGAGGAGCGGTGCCGGCACCAGGTTGCCTATCTGGGGCTGCTGGAGAACGTGCGTGTGCGCCGTGCCGGCTTCGCCTACCGCCAGCCCTACGACCGCTTCCTGCAACG
Seq A exon
GTACGGCCCCAGGAGCCCCGATGATTCCCCAGCCCTTGCACCCCATTGTGCTGACTCCCACTGTCTCCAG
Seq C2 exon
GTACAAGATGACGTGTGAATACACATGGCCCAACCACCTGATGGCCACTGACCGTGAGGCCACGCAGACCCTCCTGGAGCAGCATGGCTTTCAGGACGATGTGGCTTATGGCCACACCAAAGTCTTCATCCGCACGCCCCGCACGCTCTTCTGCCTTGAGCAGGAGCGGGCGCAGCTCATCCCCATTATTGTCCTGCTGCTGCAGAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000005644:ENSGALT00000009051:17
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0006316=Myosin_head=FE(16.7=100)
A:
NA
C2:
PF0006316=Myosin_head=PD(13.3=62.9)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CTATCTGGGGCTGCTGGAGAA
R:
ATCGTCCTGAAAGCCATGCTG
Band lengths:
181-251
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]