DreINT0014986 @ danRer10
Intron Retention
Gene
ENSDARG00000044441 | MYO7B (1 of 2)
Description
myosin VIIB [Source:HGNC Symbol;Acc:HGNC:7607]
Coordinates
chr6:28079439-28079826:+
Coord C1 exon
chr6:28079439-28079574
Coord A exon
chr6:28079575-28079662
Coord C2 exon
chr6:28079663-28079826
Length
88 bp
Sequences
Splice sites
5' ss Seq
AAGGTACTC
5' ss Score
7.46
3' ss Seq
GAAATTTACTGTGCATATAGGTT
3' ss Score
4.4
Exon sequences
Seq C1 exon
GGCACAGATGCTACAATGCTCAACAAGATGAATCAGCATCATGGAAAGGGTGATATCTACATGCCACCAAAGAACAATCACGACACACAGTTTGGAATCCGGCATTTTGCTGGAGTTGTCCACTATGACTCCAAAG
Seq A exon
GTACTCTGACTTCACATCTTTGTGTTTTTTTTTTTTTTTTTTTTTGCGTTTAAATGATCTATGTCTATGAAATTTACTGTGCATATAG
Seq C2 exon
GTTTCCTTGAGAAGAACCGAGATGCTCTGAGTAGTGACATCATCCAGTTGATACACACATCTTCCAATAAGCTCCTGAAGCAGATATTCCACAGTGAGATCAGCACCATAGAGGGGAAAACTAGCATCAACCACACCATCGTCACCCCAAAAAGCTCACTTCGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000044441:ENSDART00000143218:14
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.413 A=NA C2=0.073
Domain overlap (PFAM):
C1:
PF0006316=Myosin_head=FE(6.6=100)
A:
NA
C2:
PF0006316=Myosin_head=PD(9.5=94.5)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CGGCATTTTGCTGGAGTTGTC
R:
GACGATGGTGTGGTTGATGCT
Band lengths:
180-268
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]