DreINT0017319 @ danRer10
Intron Retention
Gene
ENSDARG00000079639 | PRRC2B
Description
proline-rich coiled-coil 2B [Source:HGNC Symbol;Acc:HGNC:28121]
Coordinates
chr5:71265168-71265942:-
Coord C1 exon
chr5:71265620-71265942
Coord A exon
chr5:71265293-71265619
Coord C2 exon
chr5:71265168-71265292
Length
327 bp
Sequences
Splice sites
5' ss Seq
TTCGTGAGT
5' ss Score
7.9
3' ss Seq
TGTTGGCCTGTGTGTCTCAGATG
3' ss Score
8.15
Exon sequences
Seq C1 exon
ACGTGTCGAGCTGGAGGGAGGGTGGAGGGAGGAATCTGCAGCCTCCATCTCTGTCCTCTGCTCCTCCGGGCGACACCGACACCAAGAGCAGCGGCTCAGTGGAGGCTCCACTTCCTCCTCCACCCTCCACTTCCACCTCCACTTCCTCCTCCGCTTCCCCCGCCGCTTCCTCTTCCTCCACTGCCGCCGCCGCTGCTCCGTCCTCTGAAGTGAAGGAGCCATCGCTGCGTCCCGCTCCACCCCTGACCCGCAGAGCTGCTCCACCTGCTCTGCAGTACCAGCACCACACCACCACCACCTACCACGACATGCTGCCCGCCTTC
Seq A exon
GTGAGTCTAAGCTTCTTTAACTTTTATTTGTGTGTGATTAGACAAAATGAAAGCGTTCAGTCAGTGAAAATAAATGTTGGATCTGTCCATCTATAGATGCATCGAAGACAAAAATGAATCTGTTCATCTTTCTATCTCTCTGTCTATCCACCTGTCTATCCGTCTACATTAATAAATGCTGTATATATATAAGCAGACACCAACATGAGACCTGTATGTCCATCATCAGTTATTAATCAATATAAGAGGAAATCAATATTGGTCCTGTACTGGAGTGAGTGTGTGTGTGTGTGTTATTGTAAAGTGATGTTGGCCTGTGTGTCTCAG
Seq C2 exon
ATGTGTCCTAAAGAGACGCGTGAGGCCCCGGGCTCCTCTGACGGCCCTGCCGCTGTCGTGGCTCCTGTACGATTCGACTCCAGACCGATCTTCAGACCGCCGTTTCCTGCGCCGGAGCCCGTCAA
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000079639:ENSDART00000112955:6
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=1.000 A=NA C2=0.976
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CCATCTCTGTCCTCTGCTCCT
R:
AGTCGAATCGTACAGGAGCCA
Band lengths:
358-685
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]