RnoINT0118610 @ rn6
Intron Retention
Gene
ENSRNOG00000010217 | Prrc2b
Description
proline-rich coiled-coil 2B [Source:RGD Symbol;Acc:1595906]
Coordinates
chr3:11209784-11210523:+
Coord C1 exon
chr3:11209784-11210025
Coord A exon
chr3:11210026-11210401
Coord C2 exon
chr3:11210402-11210523
Length
376 bp
Sequences
Splice sites
5' ss Seq
TTTGTAAGT
5' ss Score
7.4
3' ss Seq
TGATTGATCCTATATTTCAGATG
3' ss Score
8.68
Exon sequences
Seq C1 exon
ATGTGTCAAGCTGGAGGGAGGGCGGTGGGCGAAACATCATCTCTGCCGTGTCTCTGAGTGCCTCCCCAACAGAGCTGGGCAGCAGAAACTCCAGTGGGGGAGATGGAGCCTCCTCCTCGGCATGCACCAGCGATTCTAAGGACCCCTCTCTCCGCCCGGCTCAGCCCAGCCGCAAAGGGGCGTCACAGTTCATGGGACATGTTTACCAGCCGCCCACATACCATGACATGCTTCCAGCTTTT
Seq A exon
GTAAGTCTTCAGAGCATCCTGTCCCATAACTGGATGCTCCTGTTCACCACTCAGCCTGAGCTCTCTCAGGATAGCAGCCAGAGACCGCTGTGGCCTGCAGCAGAGTCCTCTCCCTCTGGCCTTTCCCGATCCACTGCCTCTGACTTCTGCCCCTGTTGTTTGAATGCTACTGTAGCTTTGACTCTTTAGAAAAAGGGAAGGCAGTATTCTCAGCTTCATTGAACCCAAGGCAGATGGAGCACTGTGATTCGTTAGAAAACCCTCCACTCTTTCCTGTTCCCCTCACCCCTCTTTTCCACTTTCCAAAATGAATTCTCATTTACCATGTAATTGGGACCATTGTTACAAAATCTTACTGATTGATCCTATATTTCAG
Seq C2 exon
ATGTGTTCACCACAGTCATCCGAGAACCAGAATACGGTGGAACGAAGCTCATTCCCCCTTCCTCAGCTCCGCCTGGAACCCCGTGTTCCTTTCAGACAGTTCCAGATGAATGACCAAGATGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000010217:ENSRNOT00000013546:2
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.924 A=NA C2=0.976
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ATGTGTCAAGCTGGAGGGAGG
R:
ACTGTCTGAAAGGAACACGGG
Band lengths:
342-718
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]