HsaINT0016694 @ hg38
Intron Retention
Gene
ENSG00000130723 | PRRC2B
Description
proline rich coiled-coil 2B [Source:HGNC Symbol;Acc:HGNC:28121]
Coordinates
chr9:131446401-131447206:+
Coord C1 exon
chr9:131446401-131446642
Coord A exon
chr9:131446643-131447084
Coord C2 exon
chr9:131447085-131447206
Length
442 bp
Sequences
Splice sites
5' ss Seq
TTTGTAAGT
5' ss Score
7.4
3' ss Seq
TCATTGATGTTATGTTTCAGATG
3' ss Score
9.87
Exon sequences
Seq C1 exon
ATGTGACAAGCTGGAGGGAGGGCGGTGGGCGACACATAATTTCTGCCACGTCTCTGAGCACCTCCCCAACTGAGCTGGGCAGCAGGAACTCGAGTACGGGAGATGGAGCCCCCTCCTCGGCATGTACCAGCGATTCTAAGGACCCCTCTCTCCGCCCGGCTCAGCCTGTCCGAAAAGGGGCTTCACAGTTCATGGGAAATGTATACCACCCACCTACATACCATGACATGCTTCCTGCTTTT
Seq A exon
GTAAGTCTTCAGAGTGTACTTTTTTTCCCCCCATGAAGTTGGATTGTGTCCAGCAGATAGGTCAAGTGGTTGAATGTCCCCCTTGGGGTCTCCTCTTGGCCCTGTTACCCTACTTCTGAGGCTTCCACTCGTTTTGCATTTTCTCTCCCTGCTTTTTAAATCTTCAGGGCCTCTGACTTCTTTCCCTGGTGATGTGGATATGATTTTAGCCTTTGGTTCTTTAGAAACAGGAGAGGCAGGTTTTCCCTGACATAGGTCCCCAAGTCTACTTACTGGCAGCAGGAATGAAATGGGGGAGATGGTGGTAGGATTAATTAGGAAACCCCATGACTTTCCTGTTTCTTTTTCCCATTTTCCACTTTATAAAACACATTCTGATTTAAGTGGAAATTGCAGTTTCAGCCATTACCAGCAAATCCTGTTCATTGATGTTATGTTTCAG
Seq C2 exon
ATGTGTTCGCCGAAGTCATCAGAAAACCAGGGTACAGTGGAACGAGGCTCTTTTCCCCTTCCTCAGCTCCGCCTTGAACCTCGAGTTCCTTTTAGACAGTTCCAGATGAATGACCAAGACGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000130723:ENST00000405995:7
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.937 A=NA C2=1.000
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ATGTGACAAGCTGGAGGGAGG
R:
TGGTCATTCATCTGGAACTGTCT
Band lengths:
358-800
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains