GgaINT0123915 @ galGal3
Intron Retention
Gene
ENSGALG00000003776 | PRRC2B
Description
NA
Coordinates
chr17:6818445-6819227:+
Coord C1 exon
chr17:6818445-6818686
Coord A exon
chr17:6818687-6819105
Coord C2 exon
chr17:6819106-6819227
Length
419 bp
Sequences
Splice sites
5' ss Seq
TTTGTAAGT
5' ss Score
7.4
3' ss Seq
TCTGCTTTGTCTTGTTCCAGATG
3' ss Score
11.08
Exon sequences
Seq C1 exon
ATGTCACAAGTTGGAGGGAGGGCGGTGGGAGGAACATAACCTCTGCTACATCTCTGACCGCCTCCCCTGCTGAGCTGGGCAGCAAGACCTCTAGCACTGGAGACGGAGCCCCCTCCTCAGTGAGTGCCAGCGATCCTAAGGAGCCGTCTCTCCGCCCAGCTCAGCCTGTCCGCAAAGGGGCTTCGCAGTTCATGGGAAATGTCTACCAGCCACCTACATACCATGACATGCTACCTGCTTTT
Seq A exon
GTAAGTTGTACTTCTCACAAAGCCCCGTAATATCTTTGCTTCTCATAATATGTACGCGTGTTGAGGAAGTCAGCTAAGAGTATTTTTCTAGGCTCTCCTCTTAGTTGGTTCCTGGAACTTGCTCAGGGATCCTTCATCTATTTTTAGTTTTCCCTATTGTGTGTTTACTCTCTCAAGTTAGAATGGCGTAGCACTTACGTGCTCCAGGGAGAAATGAAATAGCCACAGCCTTGCTCAGCCCAAGGAAAAGTTCCTGCTTTTCTAGAGCTGGAAAAGTAACGTATCTGTTAGCCAGCCAGACATTAAACATTTGTTTTAACTTTGCATAGCTGTAACTACTGTGCCTGTGTGTAATCTAATCTGGGTAAGCCTGCTTGTGGCAGTAAAAATACAGGCTCTTCTGCTTTGTCTTGTTCCAG
Seq C2 exon
ATGTGTCCACAACAGCCATCTGAGACCCCTGCGCCATTGGACCGAGGGTCTTTCCCCGTTCCTCAGCTTCGGCTTGAGCCCCGTGTCCCTTTCAGACAATACCAGATGAATGACCAGGATGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000003776:ENSGALT00000005992:6
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.975 A=NA C2=1.000
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ATGTCACAAGTTGGAGGGAGG
R:
ATTGTCTGAAAGGGACACGGG
Band lengths:
342-761
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]