MmuINT0023970 @ mm10
Intron Retention
Gene
ENSMUSG00000039262 | Prrc2b
Description
proline-rich coiled-coil 2B [Source:MGI Symbol;Acc:MGI:1923304]
Coordinates
chr2:32193763-32194501:+
Coord C1 exon
chr2:32193763-32194004
Coord A exon
chr2:32194005-32194379
Coord C2 exon
chr2:32194380-32194501
Length
375 bp
Sequences
Splice sites
5' ss Seq
TTTGTAAGT
5' ss Score
7.4
3' ss Seq
TCATTGATCCTGTATTTCAGATG
3' ss Score
9.58
Exon sequences
Seq C1 exon
ATGTGACAAGCTGGAGGGAGGGCGGTGGGCGGAACATCATTTCTGCCGCCTCTCTGAGCGCCTCCCCAACAGAGCTGGGCAGCAGGAACGCCAGTGGGGCAGACGGAGCCCCTTCCTTGGCATGCACCAGCGATTCTAAGGAGCCCTCTCTCCGCCCAGCTCAGCCCAGCCGCAGAGGGGCCTCCCAATTCATGGGGCACGGTTACCAGCCACCCACGTACCATGACATGCTCCCAGCGTTT
Seq A exon
GTAAGTACTCAAAACATCCTGTCCATAACTGTAGGCTCCTGTTCGCCCCTCAGCCTGAGCTCTCTCAGGGTAGCAGATAGGGGCCACTGTGGCCGGCAGCAGAGTCCCGCTCCCTCTGGCCTTTCCCTGTCCACTGCCCCTGGCTTCTGCCCCTGCTGTTCAATGCCACTGTAGCTTTGGTTCTTTAGAAAAAGGGAAGACAGGTGTTCTCAGCCTTATTGGATCCAAGGCAGATGGGGCACTGTGATTCATTACAAAGCTCTCCACTCTTCCCGGTTCCCGACCCCTCGTTTTCCACTTTCCAAAGTGAATTCTCATTTACCATATAATTGGAGCCATCATTACAAAATCTCAGTCATTGATCCTGTATTTCAG
Seq C2 exon
ATGTGTTCACCACAGTCATCAGAGAACCAGACTACGGTGGAACGAAGCTCTTTTCCCCTTCCTCAGCTCCGCCTGGAACCCCGTGTTCCTTTCAGACAGTTCCAGATGAACGACCAAGATGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000039262:ENSMUST00000036691:7
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.975 A=NA C2=0.976
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ATGTGACAAGCTGGAGGGAGG
R:
ACTGTCTGAAAGGAACACGGG
Band lengths:
342-717
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types