DreINT0021107 @ danRer10
Intron Retention
Gene
ENSDARG00000098233 | TIAM2 (2 of 2)
Description
T-cell lymphoma invasion and metastasis 2 [Source:HGNC Symbol;Acc:HGNC:11806]
Coordinates
chr20:4608138-4608575:+
Coord C1 exon
chr20:4608138-4608225
Coord A exon
chr20:4608226-4608487
Coord C2 exon
chr20:4608488-4608575
Length
262 bp
Sequences
Splice sites
5' ss Seq
CAGGTGTGT
5' ss Score
6.99
3' ss Seq
CTTGTTCTTAAATTCTTTAGGGT
3' ss Score
8.13
Exon sequences
Seq C1 exon
ACTTCTCGACTCGGGGATCTGGATCCTTTTAAATTCCGCTGGCTCATTCCTGTATCATCCCTTCAGGTCCGACCTGGAACTTCAGCAG
Seq A exon
GTGTGTTTATCTGAGAGATATCTCTACCAAACATGAGTTTGACATGCATTAAACACAGGCTTTCTGTGCACTGTAGCTTCGAGAAAAATATGGAGTTTAAGTGAAGAATTTCAAGGACCACTCGATCGCATCATTCAGCGCTCATAATTTAAAATCCGCCCATCATAAAAGCTTCAAGCACATTTGAAAATATTTTGTATGTTGACAAAATGTAAAACCCAGATCATATTTTGCTTAAACTCCTTGTTCTTAAATTCTTTAG
Seq C2 exon
GGTCAGAAAACCCCTGTGTCTGGGAGGTTGTTCACACCAAGTCTGAAGTAGAGGGACGACCGGAGATGTTCTTTCAACTCTGCAGCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000098233:ENSDART00000168322:24
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.044
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal4)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ACTTCTCGACTCGGGGATCTG
R:
CTGCTGCAGAGTTGAAAGAACA
Band lengths:
176-438
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]