DreINT0023537 @ danRer10
Intron Retention
Gene
ENSDARG00000074635 | abca1a
Description
ATP-binding cassette, sub-family A (ABC1), member 1A [Source:ZFIN;Acc:ZDB-GENE-031006-12]
Coordinates
chr1:51981925-51982878:+
Coord C1 exon
chr1:51981925-51982045
Coord A exon
chr1:51982046-51982815
Coord C2 exon
chr1:51982816-51982878
Length
770 bp
Sequences
Splice sites
5' ss Seq
AAGGTGTGT
5' ss Score
6.64
3' ss Seq
TAATCTTGCTTGTTCTGCAGGTG
3' ss Score
9.38
Exon sequences
Seq C1 exon
GTCACTTAGCACTAAGCTGAAGCCAATCGGAGAGGAGGATGAGGACGTAGCCCGAGAGAGGCAAAGGATTCTGGGAGGAGGAGGACAGACTGATATCCTGGAGCTCAGGCAGCTCACCAAG
Seq A exon
GTGTGTATTTGAGACACTGGAGAAATAAATGTATCATAGACAGACAGATAGATAGATAGATAGATAGATAGATAGATAGATAGATAGATAGATAGACAGACAGACAGACAGACAGACAGACAGACAGACAGACAGACAGACAGACAGACAGACAGACAGACAGACAGACAGACAGATAGATAGATAGATAGATAGATAGATAGATAGATAGATAGATAGATAGATAGATAGATAGATAGATAGATAGATAGAAAGATAGATAGACAGATAGATAGATAGATAGATAGATAGATAGATAGATAGATAGATAGATAGATAGATAGATAGATAGATAGATAGATAGATAGATAGATAGATAGATAGATAGATAGATAGATAGATAGATAGATAGACAGACACACAGACAGACAGACAGACAGACACAGACAGACAGATAGACAGACAGACAGACAGACAGACAGACAGACTCCACCAACTATTTACACGGACTACACATCCCATCAAGCTTTGCACATCACAGCTGAAACAGTTTATCAATATGGGCACTGATTACAATGACAGCTGCAGCACATTACACGACACAAAACAAGATATCCCACAATCTAGGTGTGTGAGGTGCTTAAATAGTGTGTTGTGCTGCAACTGTCATTGTAGTCAGTGGTCAACATAATTGTATTATAGTTATTGATTATAAGATCATTTAAAAAAAGAGCAAAGCTTTATTATTGTCGAATGTAATGTTACCTAATATAATCTTGCTTGTTCTGCAG
Seq C2 exon
GTGTATAAGAGGAAGCAGAAGCCAGCTGTAGACAGACTGTGTGTGGGAATCCCACCTGGAGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000074635:ENSDART00000142465:41
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.049 A=NA C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
PF0000522=ABC_tran=PU(7.6=52.4)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]