BtaINT0011206 @ bosTau6
Intron Retention
Gene
ENSBTAG00000020766 | ABCA7
Description
ATP-binding cassette, sub-family A (ABC1), member 7 [Source:HGNC Symbol;Acc:HGNC:37]
Coordinates
chr7:45178179-45178449:+
Coord C1 exon
chr7:45178179-45178299
Coord A exon
chr7:45178300-45178386
Coord C2 exon
chr7:45178387-45178449
Length
87 bp
Sequences
Splice sites
5' ss Seq
AAGGTGGGT
5' ss Score
8.23
3' ss Seq
CATGGACTTCATCCTCCCAGGTG
3' ss Score
7.71
Exon sequences
Seq C1 exon
ACCCAAGCTGAGGCCGTTACCCGCCCTGGGAGAGGAGGATGAGGATGTGGCCCGTGAGCGGGAACGGGTAGTACAAGGGGCCACCCAGGGGGATGTGTTGGTACTGAGGGACCTGACCAAG
Seq A exon
GTGGGTGTGGGTTGGGGGGCCTCCACTGCTGGGTTGGGGGGGCCTCCACTGGCCCACCCACCTTTCTCATGGACTTCATCCTCCCAG
Seq C2 exon
GTGTACCCTGGGCAGAGGACACCAGCTGTTGACCGCCTGTGCCTGGGGATCCCCCCTGGTGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000020766:ENSBTAT00000020083:38
Average complexity
IR
Mappability confidence:
NA
Protein Impact
Alternative protein isoforms
No structure available
Features
Disorder rate (Iupred):
C1=0.244 A=NA C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
PF0000522=ABC_tran=PU(7.6=52.4)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ACCCAAGCTGAGGCCGTTA
R:
GGGATCCCCAGGCACAGG
Band lengths:
174-261
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]