GgaINT0144872 @ galGal3
Intron Retention
Gene
ENSGALG00000002453 | ABCA7
Description
NA
Coordinates
chr28:2378813-2379102:-
Coord C1 exon
chr28:2378982-2379102
Coord A exon
chr28:2378876-2378981
Coord C2 exon
chr28:2378813-2378875
Length
106 bp
Sequences
Splice sites
5' ss Seq
AAGGTGTGT
5' ss Score
6.64
3' ss Seq
AGTGATCCCACTCCCTGTAGGTG
3' ss Score
8.51
Exon sequences
Seq C1 exon
ACCACGTGCTCTGCAGCTGCCCTCACTGGGGGATGAGGATGAGGACGTAGCCCGGGAGCGGGCGCGGGTGGGCAGCACCACACGGCGCAGTGCCGTCCTGCTGCTGAAGGACCTGACCAAG
Seq A exon
GTGTGTGGCTGCACCGTGCCCCGTCCCATGGCCCCCATCCCGCTGCTGGGTGCTGTGTCCCCTGGGCAGGAGGTGGTGTGCCTCACAGTGATCCCACTCCCTGTAG
Seq C2 exon
GTGTATCGGTACCGACGTGCTCCAGCAGTGGACCGGCTGTGCCTGGCTGTCCCACCTGGTGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000002453:ENSGALT00000003869:20
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.073 A=NA C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
PF0000522=ABC_tran=PU(7.6=52.4)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CTCTGCAGCTGCCCTCACT
R:
TGGGACAGCCAGGCACAG
Band lengths:
167-273
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]