HsaINT0000814 @ hg38
Intron Retention
Gene
ENSG00000064687 | ABCA7
Description
ATP binding cassette subfamily A member 7 [Source:HGNC Symbol;Acc:HGNC:37]
Coordinates
chr19:1058820-1059085:+
Coord C1 exon
chr19:1058820-1058940
Coord A exon
chr19:1058941-1059022
Coord C2 exon
chr19:1059023-1059085
Length
82 bp
Sequences
Splice sites
5' ss Seq
AAGGTAGGT
5' ss Score
10.29
3' ss Seq
AAAGACCTGCACTCTCCCAGGTA
3' ss Score
3.98
Exon sequences
Seq C1 exon
GCCCAGGGTGAGGTCTCTGCCACTCCTGGGAGAGGAGGACGAGGATGTAGCCCGTGAACGGGAGCGGGTGGTCCAAGGAGCCACCCAGGGGGATGTGTTGGTGCTGAGGAACTTGACCAAG
Seq A exon
GTAGGTGTGGTCAGGTCGACTGCTGGGTGGGGGGTGCTCCCACTGGCCCACTCACCTTTCTGAAAGACCTGCACTCTCCCAG
Seq C2 exon
GTATACCGTGGGCAGAGGATGCCAGCTGTTGACCGCTTGTGCCTGGGGATTCCCCCTGGTGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000064687:ENST00000433129:38
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.122 A=NA C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
PF0000522=ABC_tran=PU(7.6=52.4)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GTGAGGTCTCTGCCACTCCT
R:
GGAATCCCCAGGCACAAGC
Band lengths:
167-249
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
- Pre-implantation embryo development