RnoINT0010382 @ rn6
Intron Retention
Gene
ENSRNOG00000012939 | Abca7
Description
ATP binding cassette subfamily A member 7 [Source:RGD Symbol;Acc:1303134]
Coordinates
chr7:12745652-12745916:-
Coord C1 exon
chr7:12745796-12745916
Coord A exon
chr7:12745715-12745795
Coord C2 exon
chr7:12745652-12745714
Length
81 bp
Sequences
Splice sites
5' ss Seq
AAGGTAGGC
5' ss Score
10.08
3' ss Seq
AAGAACCCCTACCCCTGCAGGTG
3' ss Score
7.78
Exon sequences
Seq C1 exon
ACCAAAATCAAGACTGCCGCCGCCCCTGGGGGAGGAGGATGAGGATGTGGTTCGAGAGCGTGAGCGGGTGACCAAGGGAGCCACCCAGGGGGATGTGCTGGTCCTCAGGGACTTGACCAAG
Seq A exon
GTAGGCACATGGTAAGGCAAGTGAATGGGGGGTGGTGGCATGGGTACTCTATCCTTTCTAAAAGAACCCCTACCCCTGCAG
Seq C2 exon
GTGTACCGTGGGCAGAGGAGCCCAGCAGTGGATCACCTGTGCTTGGGGATCCCCCCTGGGGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000012939:ENSRNOT00000064886:39
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.549 A=NA C2=0.024
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
PF0000522=ABC_tran=PU(7.6=52.4)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ACCAAAATCAAGACTGCCGCC
R:
CCAAGCACAGGTGATCCACTG
Band lengths:
167-248
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]