DreINT0024341 @ danRer10
Intron Retention
Gene
ENSDARG00000016818 | abcg2d
Description
ATP-binding cassette, sub-family G (WHITE), member 2d [Source:ZFIN;Acc:ZDB-GENE-050517-38]
Coordinates
chr1:49942828-49946800:-
Coord C1 exon
chr1:49946589-49946800
Coord A exon
chr1:49942888-49946588
Coord C2 exon
chr1:49942828-49942887
Length
3701 bp
Sequences
Splice sites
5' ss Seq
CAAGTGAGT
5' ss Score
9.1
3' ss Seq
TTTCTATCTCTCTTTTTCAGTGG
3' ss Score
11.45
Exon sequences
Seq C1 exon
ATGCCTGACAATGCTGTCTTTGAGCATGATCAAATCTCTGAGGAGACTGGCAGGAATGGGCAGAACGGGTCAAAGATCATCATCATGGAGCCCATGAAGAAGCAGCACGGAGCCACGGTCAGTTTCCACAGCATCCGCTATAGAGTGGAGCAGAAAACCGGACCCGTTTGCAGGAGAACAACAGTCCAGAAGGAGATCCTGCTGGACCTCAA
Seq A exon
GTGAGTCTAGTTAGTGGAGGGATTTAAAATGGATTTAAACGGCTCCAATATGATTCGTTCAATGATTCATTTGTTCCCAAACCCCTCTTTAGCACAATGCAGATCTGCGCTGCAGTCTGTTGCAATTGGTCGACTGTGATATATTTCCCAAATGATGTTTAACAGAGCAAGGAAATCTTCTGATAATATTTTTTCTTCTGGAGAAAGTCTTATTTGTTTTATTTCGACTAGAATAAAAGCCGTTTTTAATGTTTTAAAATCATTTAAGGTCAAAATGATTAGCTCCTTTAAGCTATATTTAACCCTAACTCTAACCTGTCTAGTTAACCCAATTAACCTAGTTAAGTCTTTAAATGTCACTTAAAGCTGTGTACAAGTGTCTTGAAAAATATCTAGTCAAATATTATTTACTGTCATCAAGACAGTCAAAGATAAAATAAATCAGTTATTAGAAATGAGTTTTTAAAACTATTATATTTATAAATGTGTTGAGAAAAAATGTGCTCTCCGTAAAACAGAAATAGGGGACAAAAATAAACAGGGGGGCTAATGATGGAGGGGGGCTAATAATTCTGACTTCAACTGTATGTGTGAGCCCAATGCAGGCGTGCATTAAAGCAGGGGTTCTCAACCTTCTCAACCTTTTCATTTTGGGGCCCACTTTTTTTCCGATCAATTTTTGAAGGCTCACCTGTCTGACATTTTCTCTAAAATGTTTGTATGAAATGCTCATTAAACCTTTATTTATTAACAAATATGTATATACAGTTGACGTCAGAATTATTAGCCGCCCTGTTTATTTTTCCCCCTAATTTATGTACCACTTAAACTCTGCGGACCCGGTACCGGGTCTGTGACGTCATCGACTTTCGCTTCAGATTTAAAGGGCTAGCGATGCACCATACCCCCGTAAGTGGTGTCGTTTGAAAGTGTAGAATCTCTATTTTATGCACATATGCATCACTTTGGTTTTTATTCTACTGTATAAAAGTTATTTACACTTAAATACACAGTATTTTAGACACCGAGCTAGGTATTTTACATTGGTTCATTTTCATATTTTTTTATATGACACATGTACAAGTTATAGGTCAAATGAAAGCTCTTGCCGGTGCTCATACAGTTCTAGCATTCTTTTTACTGAAATATATTCATATGCAAAACAGTTGTTGAATGAATCGCCGTGTTTCCATGGCGCAGAAATGTAAACAAAACATTCATGATCAATAAGCAGCCCCAGATAGCACAGACAGCTGTCATCTCTTACCTTATGCTGTGCCCTTCAGGGGCATTCTCCTCTGTTTTTGAGGTGATGTGCATAAGTAATCCTTTTATATGTCTGACGTGCTCCAAACACAGTGAATTATGTATGATCAAACAAAAGAAGAGTGAAATATGAAAACAATGATCGACCCCTGTGGCTTGTACAGCACCTCTCATCAGTTGGAATACAATAACTTTTGCATAGATTATGGTATAGACCTTTTTCTTTTTTCCTATCATTACAGACATGTGCAGGAACCACCAAAATAATTACAGCACGCTAGACCACACAGAACCTAAAAGATACACTTTCAAATTTGTGTTTATAAAAAAAGAAATACAAAAAGCGCCTCTTTTTTTAGGTGTTAATTATAACACAGACGACATATACAGCTATTTTAAACACTTTCAATAGTGTTTTATGAAATTTCAAAGGGTTTTCTTTAAAATTATACCAAATTTTTGCTTTTACACCTCTGTATGTGGATTTGGGAAGCTTTTAAATTTGGGTAGGCAAAATCCAGGCGGAAATCCCCAAATAGCAGCAGAGTTTAAGTGGTTAACTGTGAAGGTTTATTTTACATTCTATGGCAGAAACATCATTGAGTCTCGCTAGATCCTCCTGTATGGGCACACGTCTGTTATAAAACAAGTCACAGGATACAAATTTGGACAACCATGCGAATATATTAAATATATATTAATAGTAATATATATTTATGTTAATAATAATAATTCATTCATTCATTTTCTACCGCTTATCCGGGTCGCAGGGTCACAGACTTTACCCCCATAGATTTCCATTCATACGCATGCGAATGCGACAGACCTGAAACGCAAGCTCGTGCGACAAGTTTCGCAGTTCGCCGCTTTGGAAAGTTCAAGCTTGGTGAACTCTGACCAGCGAAATCGCATCAAGTGATTGCGTGAGACCAATCAAAGACCAAAACATGACCTCTCTGGACAGAAATTTAAAATATGGACCAAACGCTTGCAATTTATGTTTAATCATCTACTTTAATCTCGCCTCATTTCAAAGCTCCGTATGACAGTATTTTGCATAGTGTGACAACGGCATAACACCGATTAGTGTGATTTATGACAAACGGCCTGCACATCCTTTCCTAGTTCAGTGTATCACAGAAAAGCAGATTTGAATTTAGCGGCTGATTACGTGACGAGCTGAACACTCTAATCACACCGGTGTGATCATACGCTCCTGGGACCAGGGGTGTGAATGTACGTGACAAATGTTGGTGAACTCTGACCAGCGAAATCGCATCACATAATTGCGTGAGACAATCAAATCATGAAGATCAAATCATGACCTCTCTGGACAGAAATGTAAATCTTAATAATAATAATAATTCATTTTATTTATAAATGGCGCCTTTCTGGACACCCAAGGTCGCCTTACAGTAAGCATCAGCAGACATGCTAAACAACTTAAACATAAAACTAAAAACACTCATTGACCAGACAAGTTAAAACGCAATAGCGAATATAAAAGAACATAATAAAAACATGATAAAAAAATTGTTAAGTAAAAGCCTGCTTAAAAAGATGGGTCTTTAGACGTGATTTAAAATTGTGAAGACTGTCACTGCTCCTAAGATCTACTGGAAGTGAGTTCCATAGCCTAGGAGCCATAGAGCTAAAAGATCTGTCTCCCATTTTGCTCAGTCGAGTGCGAGGTGGTGCCAGGGTGAAGTTGTTGGCTGACCTAAGGGTACAAGAAGGGGTGTAAATATGGAGAAGTTCAGTGAGATATTGAGGAGCGAGATTATGAAGTGCCTTGAAAGTTAGAAGTAATATTTCATGGACCAATCGGTCGCTTTTTTTAAATGTCTAATCATCTTGTTTAATCTCGCCCCTTTTCGCAGCTCCGTTTGACAGTATTTTGCATGCACAAACTCTAATGTGACCATAATAGGGGCCCTTTAGCTATTCTCTATTGAATCTGTAGATTCTGATGCGGCAGTCTGTATGAAACCTTTAATTTGACATGTTCTGCATTTCATGTGTTCACCAGAACAACAGAACTGTGCTTCTTGTAAAGTCTTTAAAAGAGCTTGACGTTTCCCACAACCAAGTGCATAGTTCCTTTGGACATTCCCTCTACAGAGTTAGTGTCAATTATATGATATTATGAATGGGTTTGTGACTCTAATCTCTTGGCTTGCAAACCCACCAGGGTTAAATCCAGTCAAGTGTGATCATGACCAAATACAATGGCAATCTGAAGCAGTTTTAACCTGGTTTTAACTATATATAACCATTAAGACGATTCACCAGGAGTCTGATTTTATCCTGATTGACTCTCTTGAAACTCTAATATCAGTGTTGATCGTAAACATGTTTTATTTTTTTCTTTCAGGCCTGGCAAATTCCATAGCAAGTGACATGAACATAATCTCATTTCTATCTCTCTTTTTCAG
Seq C2 exon
TGGGATCATGAGACCTGGTTTAAATGCTATTTTGGGTCCTACGGGAAGTGGCAAATCTTC
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000016818:ENSDART00000022733:1
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion (1st CDS intron)
No structure available
Features
Disorder rate (Iupred):
C1=0.394 A=NA C2=0.048
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
PF0000522=ABC_tran=PU(13.0=90.5)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]