HsaINT0001574 @ hg38
Intron Retention
Gene
ENSG00000118777 | ABCG2
Description
ATP binding cassette subfamily G member 2 (Junior blood group) [Source:HGNC Symbol;Acc:HGNC:74]
Coordinates
chr4:88132576-88140014:-
Coord C1 exon
chr4:88139793-88140014
Coord A exon
chr4:88132636-88139792
Coord C2 exon
chr4:88132576-88132635
Length
7157 bp
Sequences
Splice sites
5' ss Seq
CAAGTATGT
5' ss Score
7.44
3' ss Seq
GTCTGTTTTTGTGTTTACAGTGG
3' ss Score
7.91
Exon sequences
Seq C1 exon
AAAGATAAAAACTCTCCAGATGTCTTCCAGTAATGTCGAAGTTTTTATCCCAGTGTCACAAGGAAACACCAATGGCTTCCCCGCGACAGCTTCCAATGACCTGAAGGCATTTACTGAAGGAGCTGTGTTAAGTTTTCATAACATCTGCTATCGAGTAAAACTGAAGAGTGGCTTTCTACCTTGTCGAAAACCAGTTGAGAAAGAAATATTATCGAATATCAA
Seq A exon
GTATGTACATGAACTTGTAAAAAGACAGCTTTTTAATTTACCTACAGTGAACCTCACAGGTTTTGGCTATTTCCAAGAAACTGGCTATGAACATTTTTGTACAAGTCTTTGCACAGATATACAGACACATGCTTTCATTTGTTTTAGCTAAACTAGGAGTGAAATAACTGGGCCACATTTTAGGTATATGTTTGACTCTCAAAGTAACTGCCAGACTTTTTTAAAAAATGCACCACATGTGGCTGGATATGGTGGCTCATGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCAGGCAGATCATGAAGTCAAGAGATCGAGAACATCCTGGCCGACATAGTGAAACCCTGTCTCTACTGAAAATACAAAAAATTAGCTGGGCGTGGTGGTGTGTACCTGTGATCCCAGCTACTTGGGAGGCTGAGGCAGGAGTATGGCTTGAATCTGGGATATCAAGTCTGCAGTGGGCGATGATTGTCCCACTGTACAAATAGGTGGCAAAGTGAGAGCCTATCTTAAAAGAAAAAGAAAAAGCGTACTTTGTGAGGGTGCATTTATTTTGCTTATTTTATCTTTTAAAGTTAGTAGATGAGTAACTTGATGCACTAGAAGTCTCGTCTGCTCAAGGCTTCACACTTTTTTTTTTTTTTTTGAGAGGGAGTCTCGCTCTATCACCCAGGCTGGAGTGCAGCAGCACAATCTCGGCTCACTGCAACCTCCACCTCCCGGGTTCAAGTGATTCTCCTGCCTCAGCCTCCCGAGTAGCTGGGATTACAGGTGTGTGCCACCATGCCTGGCTAATTTTTGTATTTTTAGTCAAGATGGGGTTTCACCATGTTGGCCAGGCTGGTCTTGAACTCCTGACCTCATGATCCACCCGCCTCAGCCTCCCAAAGCACTGGGGTGTGAGCCACTGTGCCAGGCCACGCATTTTTTTTTATGGTCAAATGGCATGCATTTCAGCAATAGATGAGTTCATCTTTACTGCATGAATAGAACTGTGTTCCTTACTAGGCTCATAAAAATGCAGTCAGATCTTGCAATTCTTTCACATTTTAGTGGAAAGGTCATCAGGGGTTGGTGTTTTTGCTGCTGGCATTTCCTGTTTAAGTATCCATGAGAAAGGCCTTTTTGGCTGTAGTATTTCCAGTCTTTCTCCTATCTGCTGGCTCCAACTCTAAATACAGTTTCTGGAGGTAGAGGAAGGGCTGCTGTCATTTATCTTACTTTTGATTTGTGTTTGATAGCAGCATCACCATTCAGATAGTCATCTACATTCCAAAAAAGCTGATGAGAATTTTGATTTTGGTTTTTCCTCTGGACATTTTGTAATTTCACTTCTAGAACTAAGTCACTATAACCTGATTTCCTCTGCAGGGGGAAGAAGATAAAAACAGTCTGACCATGAGAATTTAAAAAGTTGTGATTCTTCTGACTTAGGACAAATCTTTCTCTTATGCTTGTTTGTCTCCATACCCAGCATTTGAGCTTTCCCTCACCAACGCTGAAGATCTTATGGAAAAAAAAATTCATTCCCATAGATATGTGGATGTCCTGTTATTTTAAGAGAAATTCATTATACTCTTGGAACATTTTTAATTAATAACTTACTTTGAAATGATTTCAAATTTATTTATTTATTTTTTAGAGATGGAGTCCTGCTGCATCACCTAAGCTGGAGTGTGGTGCTGCAATCATAGCTCACTCTAAGCTCCAACTCCTGGGCTCAAGTGATTCTCCCGCCTCAGCCTCTGGAGTAGCTAGATGCCACAATGCCTGGCTAATTAAAAATTTTCTGTGTGTGGAGATGGGGTCTTCCTACGTTGCCCAGGCTGGCCTTGAACTCCTGGGCTTAAGTGATCCTCCCACCTTGGCCTCCCAAAGCACTGGGGTTATAAGCATGAGCCACTGCACCTGGCCTGATGTTAAATTTAAACGTTTCAGGAACATAACCCTTTTCATTCAGGTTCTCAGCCAACATTTCACTGCATTTGTTCTCATCACTTTGTCTCTTCATGTTCCCATGGTCATTACTGTTTTTTCTGAACCGTGTGAGTGCAGGCTGTCCACATGGTGCTTCCTTCTCCTTAACTCCTTTGTGTGTGTTCTTGAAAAAACGACCCTCTCCTATATAACCACTCAGACATTGTCCAGGAGGAGCCAAGGGGAAATGTAGCCTTGTAATGAAGGTCGTGGTAGGTCCTCAGGGCCTTGGGTCAACCATGCCCCTCACATATTTGACTGCCACCATATCCTGTCTCTTCAGTCTCATTCAACGTGGTATTTTCTTATCTCATCCCACCCCTGGTGATGTTAAAATTGATCACTTGGTCATGTTGATGTCTGCCAAACTTGGCTATAATGTCACCCTTTCCCCTTGGTAATTGATTAGTGTTATGAGGAGAGATAAACTGACATTATTCCAGAACTCCATTCTACATTAAACTTCACCAACTTCAGTCCCCACTGGATGACTCCTGCCTGAGTCAGCCACCACTATCATAGTCGCCAAACAGTGATTTTCTATTATCATTATCTCTTAGTTTGTTTTACTAAAAGGAAAAACCTTCATCTATCACCAGTATAGAGTCAGGGATTTGTATTTTATTCAATTAACGCATTATTATGTTTTACCTTCATACTCTTATTGTTCCTGATTTGGTGGGAGATCTTTCAAGGTGGGTTCTTCCCTCTCTCCGTCTCTCATTCTTTGGATATATCTCCTCATTCTTATTTTATTTTATTTTATTTTATTTTATTTTATTTTATTTTATTTTATTGAGATGGAGGTTTGCTCTTGTTGCCCAGGCTGGAGTGCAGTGGCATGATCTTGGCTCACTGCAACTTCCGGCTCCTGGGTTCAAGAGATTCTCCTGCCTCAGCCTCCTAGCTGGGACTACAGGTGCCCACCACCATGCCCAGCTAATTTTTTGTATCTTAGTAAAGACGGGGTTTCATCATATTGGCCAGGCTGGTCTCAAACTCCTGACCTCAGGTGATCCACCTGCCTTGGCCTCCCAAAATGTAGGGATTACAGGCATAAGCCACCGTGCCCAGCCTCTTTTTGTAATTAAACAAATTTTATTAGAGACAAGGTCTTACGTTGTTGCCCAGGCTGGAGTGCAGTGGCATGATCATAGCTCACTGCAGCCTCAATCTCTTGGGCTCAAGTGATCCTATCACCTCAGCCTCCTGAGTAGCTGGGACCACCGGCACATGCCACCACTTCCAGCTAACTTTTAAGTTTTTTGTAGAGATAGGGTTTCACTATGTTTCCCAGGCACATCTCAAACTCCTGGGCTCAAGTGTTTCTCCCACCTTGCCTCATTCTTTGAATATTTGCTTGGCACAGCGAGCAGTTCCAGACTCACTGTGTACTTACCCTGCCTCAGACCTAGAATCAGCTGTTGATTTTTATGGAGGAGATATTTACAAAACCAAAATCTAGGTGTTTAAAATGCTCATTGCTATTGGGATGTCATTGTTTCTAGGCTTTCTCAGTGGAGTGAGACCTAGAGAAGATATGTATGTGTATACGTCTACACACATACGCATACACATACATGCATAACTTTTTAAAAAACTACCTCCCACGTGCAGGTGCATACAGATCTGGCCAAAGCGGGCGGGAGAAGAGCTGGGGGAGCAGTGGTGACCATTCCCGCAGCACCCTGGGAGTTTCCATCTTTATGTTTCTATAGCTGTCTTTGTATATGGATTAAAACCTATGGCTTCTCATTAATTTCTCCAATTCTCATCTGAACCCTCAAGATTCTGTCTATATTTCCATGTTAGTAAAATTTCAAAAAGTGACAAATCTAGCTCTAATTGGCTAGAGAGGGTGGGAGATTGTTTATATTATGGAATAAGAAAATCAGCAAGTACATTAAGGATGTACGTTAAGGATATACTTCCTAATTTTCCTATTCCATAATATAAACAATCTCCCCACCCTCCAGCTATCTCTTCTCAACGTTTTTTAAAAGGTGAAAACATTTTTCCTTGTCTTTTTAGAAGTAATCCCATTTATAAAAATGCAGAAATTTATTTATTCAACAAATTTTGAATGCCTGCTAGTGCAGGACATTGTGCAAGATGCTAGTGACACAGGTAAATCCTCAGTTCAGGGAAGCCTTAAAGCCTAGTGGGGGATTCAGAACACACTTTCACGCTGATAAAAGGATTGATTAGAAGACCCAATGGGAGCCCCAACCCTAAATTGGAGGGCCCGGGCGTGGTGATTGAGAAAGTGAAGATTTTGTGTGTGTAGGGATGGGAGGGTGGGAGGGAGGTGAGCATTGACCTCTCTTGTCCATAAACAAAACAAGACCAAGGGATTAATCATTATCCACTAAAATGTAATAGAGGTGACAGGAAATTTTGGGGTAAATTTTATTCCCTGTGTTCCAGGTTCATGTTCAGTGGTTTACAACAACTGTGCTGTATGTCATGGGCAGGAGGGTGTGAGAGGTGGTAGCAATGTGGCATGCTGTTCTTGTTGACAGACTTTTATAGTGAGGGACACTGACCTGCATGCAAATGCTGTAAAGCAATAAATAAGGGTGGGGAATGCAGTTTCAGGGATGATAGAAGGGTGGAGGGTGGGGTGGGCAGGCCAGTGAATTGTAGACCATAGACTAGAACAGAGGTCAGCAGGCTGTTTCCATAAAGGGCAGATAGTATTAATAAACATTTTCAGCTTTGTGGGCCATGCGTCTGTGTTGCAGCTACTCAGCTGTGGTGTAGCATGAAAGCAGCCCTAGGTAATATGTAAGGGAATGAGCACGGCCCTGTTCCAACAACCCTTTGTCTAAGAAAACTGCTGATCCCTGGACTAGAATGTAAACTCCACAAGGGCTCAGACTTTGTTTTTCGTTTGTTTGTTTGTTTTGTTCTCAACTCTCCCATGCCCTAGAAGAATATCTTGTATGTACACAGTAAATACTTGATCATTGTGTTGAGTGGATGGAGTTGGAATTAGCCACTGCTCCAAATGGAAACTCTTGGCATTTATGACTGGACATTGTTGTTGTTTTCTGTAATGCCAGGGTTTCATCCCAAAGTAGTAAGCCAAGCTCTTTGTCTTAGAACATTCATGTTGAGGTTTGGGTTAATCATTTAGGATTGCTTGGTCTTTATTTGAGTAGGTATTTTAGAAACCTGGAAAGCTTTTCTGACAGTGGAGCCTTAGTGAATAACAAGCTTATGGTGATTTTAGAGGCAGTTATTAGGGACCTGTTTATAAAGAAGATGCATCAAGAGCTATAGATAAATGCACCTTGAAAATTTGCCCAATCATTAGTATGTTGTTTTACACATTTAGAGGGAAGAGTCCACTGAAAGAGTAAGAGATTTTTCTGTTAGATCTTGCTCCTGGTTTACCTAACTCCCATTGTCTTTGTGCAGCGTTTCACTGAGAGATACCCCAGTTAATGAGCAAAGTGAAAGCTACATTTCACTCTTGTACCCACCAGCCATTGTACAATTGTGATAGTTCAAGTACAACAGGCAGTAAATGCTCAGGGAGTCTTGGGTTTAAGCACTGTGGTGCAGTTGCTTATCACTCATAATTGTATAGGATCATAGGATTGGCCTCTGTGCTAATCATTATTTGAGAATGAAATAGTCTTTGGCTTTGACCTTCCATTTGGAATAGATATTACTTTCTCTGTGGAATATATTGTAACTTACTTATCAATTCTAAGGAGAGAATGGGCATAGATACCTGTGTTTTGAAAGGAACAAGCCAGGCCCCACCCTGAAGTCTCCTTTCTTCTTCTTCTTTTTTTTTTTCTGAGACGGAGTCTTGCTCTGTTGCCCAGGCTGGAGTACAATGACGTGATCTCGGCTCACTGCAACCTCCACCTCCTGGGTTCAAGTGATTCTCCTGCCTCAGCCTCCCGAGTAGCTGGGATTGCAGGCACCCACCACCGTGTCTGGCTAATTTTTGTATTTTTAGTAGAGACGGGGTTTTGCCATGTTGGCCAGGCTGGTCTAGAACTCCTGACCTCAAGTGATCCACCCGCCTCGGCTTCCCGAAGTGCTGGGATTACAGGCATGAGCCACCACACCCGGCCAAATTCTCCTTTCTCCAGTTCCTTCACTTATCATTCTACTTGCTATCTTTAGGAGAAAATCAAACTATTTGCTGTCTTCTTGGGTCTCAGCACAGTCAACACTGCCATAATTTTTTCCACCTTCCTTCTCTATCTGAATATTCACTACCCTCAGACATCCACTTTGTTTGAAACGTGCTTATGTATGTACCACGTCTTCATATTCTTAAAGGATGACCCTACCAAAGTGATGTCTTCTCCTTCTAAACTTGGAATTTTCCAGTGTATTTATCTGACTCTTAACAAGGAAGAAAATGATATATCTTGAGGATATATCTTTTACTTTTCTAAATGGATTAAGGCTTTTTTTTTCTTTCGGTCATGTTTTCTTTTTATCCTGAAGTGCTTTATCCCAGCCTCGATTTCTACTTAGATGTTTCTTGGGCTGATTAGATTTTAGCAGTGAGAATACTTCTACCGGTATTCCACAAATTAGCGACTTATTAATTGTGTAGAATTTGACTAGGTAGCAAATGTGACCACTTGAAGATACAGTACTGATCATCAAACAGTACTCAGAACACGCCATGTATTTCGTTTCACACTGTGTTAAGAGCAGTAAGTGTAACGGAGATGTTTCACAAGAATCTGTTAGTTATTTCAAGGAACGTTAAATGTTGAATGTCATTTTCCAGAAAATATAAATGGGTTAGAGAATAAGTGAAAGGAATTTAGAGGAATCTATGCCATTTTTCTTGTAGGACTTGACCAGTGATTAACATCCATTATATATTACACATCAAATCAACAATCTTTTTTTTTTTTCTTTAAGTAGAGACAGTGTCTCCCTATGTTGCCCAGGCTGGTCTCAAACTCCTGGCCTCAGGCAATCCTGCTTTGGTCTCCCAGAGTGCTGGGATTACAGGCCTGAGCCACCATGCATGACCTGTTTTGTTTGTTTGTTTTCTTTAAGAGTTGGTTTGTGCTTGTGTTCTATTTGTAATTTCATCAACCTTCATTGAGTATATTCAGTGCCTACCCTAAATTAATAGAACCTGACTTAAAATGGAATAGTAAATCAGTCTGTTTTTGTGTTTACAG
Seq C2 exon
TGGGATCATGAAACCTGGTCTCAACGCCATCCTGGGACCCACAGGTGGAGGCAAATCTTC
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000118777:ENST00000237612:2
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion (1st CDS intron)
No structure available
Features
Disorder rate (Iupred):
C1=0.025 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0000522=ABC_tran=PU(2.6=5.9)
A:
NA
C2:
PF0000522=ABC_tran=FE(13.2=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
- Pre-implantation embryo development