GgaINT0042859 @ galGal4
Intron Retention
Gene
ENSGALG00000005792 | ABCG2
Description
ATP-binding cassette, sub-family G (WHITE), member 2 (Junior blood group) [Source:HGNC Symbol;Acc:HGNC:74]
Coordinates
chr6:17103311-17104230:+
Coord C1 exon
chr6:17103311-17103597
Coord A exon
chr6:17103598-17104170
Coord C2 exon
chr6:17104171-17104230
Length
573 bp
Sequences
Splice sites
5' ss Seq
TTAGTAAGT
5' ss Score
7.79
3' ss Seq
TAACTCTTTCCTTCTTCCAGTGG
3' ss Score
9.24
Exon sequences
Seq C1 exon
TAGATGGGAACTGCTCAAAACAACAGTCACCTCAGAAACCCTCATGCGGTTGAGTTTGACCTGTGTAACAAGGATGTGATGGCGGACACATTTGATCACAGTGTCATTTCTGTTGGAGAAGAGGAAGGAGCAGACAGTTTCCAACGATCTCTTCCAACACGAGATTCTCTCCGATCCCCTCGAGGCTCCATTGTGAGTTTCCATAACATCCAGTACTCCGTTAAGCAGTCCAGTGGATTCCTATGTAGACGGAAGACTGTGGAAAAGAAGATCCTTCATAATGTTTA
Seq A exon
GTAAGTTCTTGCTTAGCCAAAATACCGTGGGGTGGAAATTAATCTGCTGCTGTGAGTTGGTGATGTGATTATTACCTTCCAGACCCAGCTGTACTGGTAGAGAAATGACTGCCCTCCTGCCAGTCTGCAGTTCATGTGAGCACTTGCTATAACATGTTTTAGGCATAAAAGTATGGAGTATAACTGGAGCAGTGTCAGTCATTGATGTAAGAAAATTAGGACCAAACTTGTGTGAACAGTGCTGCCTGAAGATCTGAGGATTTCCTTAACTATGGTCTGAGTTGTGGTGGGAGGAAGTGAGTAACAGAGAGCCGTTGTTTCTTTTCCAGACCCAACTCAGCAAGAAGACAACTCCTATTCTGTATTTTGTAGGTTACTTTTGATGCACAGCTCTAATTCTGTTCTGACTGGCAGTTTGGGACGAGAAAGGAAAATGCTTTCTGATTTCAGATTTAAGAAGGCTTTAATAATCTTGAAGTTTTCCTTTCAACAGCATTTTGTTCACACCTTACCTCTACTATGAGCCACATGTGAACAGTCTCCCATTTGGAAATAACTCTTTCCTTCTTCCAG
Seq C2 exon
TGGCATTATGAAGCCAGGCTTGAATGCTATCCTGGGGCCAACAGGGAGCGGCAAATCTTC
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000005792:ENSGALT00000009304:1
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion (1st CDS intron)
No structure available
Features
Disorder rate (Iupred):
C1=0.205 A=NA C2=0.048
Domain overlap (PFAM):
C1:
PF0000522=ABC_tran=PU(2.6=4.2)
A:
NA
C2:
PF0000522=ABC_tran=FE(13.2=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGGGAACTGCTCAAAACAACAGT
R:
GAAGATTTGCCGCTCCCTGTT
Band lengths:
343-916
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]