HsaINT0001574 @ hg19
Intron Retention
Gene
ENSG00000118777 | ABCG2
Description
ATP-binding cassette, sub-family G (WHITE), member 2 [Source:HGNC Symbol;Acc:74]
Coordinates
chr4:89053728-89061166:-
Coord C1 exon
chr4:89060945-89061166
Coord A exon
chr4:89053788-89060944
Coord C2 exon
chr4:89053728-89053787
Length
7157 bp
Sequences
Splice sites
5' ss Seq
CAAGTATGT
5' ss Score
7.44
3' ss Seq
GTCTGTTTTTGTGTTTACAGTGG
3' ss Score
7.91
Exon sequences
Seq C1 exon
AAAGATAAAAACTCTCCAGATGTCTTCCAGTAATGTCGAAGTTTTTATCCCAGTGTCACAAGGAAACACCAATGGCTTCCCCGCGACAGCTTCCAATGACCTGAAGGCATTTACTGAAGGAGCTGTGTTAAGTTTTCATAACATCTGCTATCGAGTAAAACTGAAGAGTGGCTTTCTACCTTGTCGAAAACCAGTTGAGAAAGAAATATTATCGAATATCAA
Seq A exon
GTATGTACATGAACTTGTAAAAAGACAGCTTTTTAATTTACCTACAGTGAACCTCACAGGTTTTGGCTATTTCCAAGAAACTGGCTATGAACATTTTTGTACAAGTCTTTGCACAGATATACAGACACATGCTTTCATTTGTTTTAGCTAAACTAGGAGTGAAATAACTGGGCCACATTTTAGGTATATGTTTGACTCTCAAAGTAACTGCCAGACTTTTTTAAAAAATGCACCACATGTGGCTGGATATGGTGGCTCATGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCAGGCAGATCATGAAGTCAAGAGATCGAGAACATCCTGGCCGACATAGTGAAACCCTGTCTCTACTGAAAATACAAAAAATTAGCTGGGCGTGGTGGTGTGTACCTGTGATCCCAGCTACTTGGGAGGCTGAGGCAGGAGTATGGCTTGAATCTGGGATATCAAGTCTGCAGTGGGCGATGATTGTCCCACTGTACAAATAGGTGGCAAAGTGAGAGCCTATCTTAAAAGAAAAAGAAAAAGCGTACTTTGTGAGGGTGCATTTATTTTGCTTATTTTATCTTTTAAAGTTAGTAGATGAGTAACTTGATGCACTAGAAGTCTCGTCTGCTCAAGGCTTCACACTTTTTTTTTTTTTTTTGAGAGGGAGTCTCGCTCTATCACCCAGGCTGGAGTGCAGCAGCACAATCTCGGCTCACTGCAACCTCCACCTCCCGGGTTCAAGTGATTCTCCTGCCTCAGCCTCCCGAGTAGCTGGGATTACAGGTGTGTGCCACCATGCCTGGCTAATTTTTGTATTTTTAGTCAAGATGGGGTTTCACCATGTTGGCCAGGCTGGTCTTGAACTCCTGACCTCATGATCCACCCGCCTCAGCCTCCCAAAGCACTGGGGTGTGAGCCACTGTGCCAGGCCACGCATTTTTTTTTATGGTCAAATGGCATGCATTTCAGCAATAGATGAGTTCATCTTTACTGCATGAATAGAACTGTGTTCCTTACTAGGCTCATAAAAATGCAGTCAGATCTTGCAATTCTTTCACATTTTAGTGGAAAGGTCATCAGGGGTTGGTGTTTTTGCTGCTGGCATTTCCTGTTTAAGTATCCATGAGAAAGGCCTTTTTGGCTGTAGTATTTCCAGTCTTTCTCCTATCTGCTGGCTCCAACTCTAAATACAGTTTCTGGAGGTAGAGGAAGGGCTGCTGTCATTTATCTTACTTTTGATTTGTGTTTGATAGCAGCATCACCATTCAGATAGTCATCTACATTCCAAAAAAGCTGATGAGAATTTTGATTTTGGTTTTTCCTCTGGACATTTTGTAATTTCACTTCTAGAACTAAGTCACTATAACCTGATTTCCTCTGCAGGGGGAAGAAGATAAAAACAGTCTGACCATGAGAATTTAAAAAGTTGTGATTCTTCTGACTTAGGACAAATCTTTCTCTTATGCTTGTTTGTCTCCATACCCAGCATTTGAGCTTTCCCTCACCAACGCTGAAGATCTTATGGAAAAAAAAATTCATTCCCATAGATATGTGGATGTCCTGTTATTTTAAGAGAAATTCATTATACTCTTGGAACATTTTTAATTAATAACTTACTTTGAAATGATTTCAAATTTATTTATTTATTTTTTAGAGATGGAGTCCTGCTGCATCACCTAAGCTGGAGTGTGGTGCTGCAATCATAGCTCACTCTAAGCTCCAACTCCTGGGCTCAAGTGATTCTCCCGCCTCAGCCTCTGGAGTAGCTAGATGCCACAATGCCTGGCTAATTAAAAATTTTCTGTGTGTGGAGATGGGGTCTTCCTACGTTGCCCAGGCTGGCCTTGAACTCCTGGGCTTAAGTGATCCTCCCACCTTGGCCTCCCAAAGCACTGGGGTTATAAGCATGAGCCACTGCACCTGGCCTGATGTTAAATTTAAACGTTTCAGGAACATAACCCTTTTCATTCAGGTTCTCAGCCAACATTTCACTGCATTTGTTCTCATCACTTTGTCTCTTCATGTTCCCATGGTCATTACTGTTTTTTCTGAACCGTGTGAGTGCAGGCTGTCCACATGGTGCTTCCTTCTCCTTAACTCCTTTGTGTGTGTTCTTGAAAAAACGACCCTCTCCTATATAACCACTCAGACATTGTCCAGGAGGAGCCAAGGGGAAATGTAGCCTTGTAATGAAGGTCGTGGTAGGTCCTCAGGGCCTTGGGTCAACCATGCCCCTCACATATTTGACTGCCACCATATCCTGTCTCTTCAGTCTCATTCAACGTGGTATTTTCTTATCTCATCCCACCCCTGGTGATGTTAAAATTGATCACTTGGTCATGTTGATGTCTGCCAAACTTGGCTATAATGTCACCCTTTCCCCTTGGTAATTGATTAGTGTTATGAGGAGAGATAAACTGACATTATTCCAGAACTCCATTCTACATTAAACTTCACCAACTTCAGTCCCCACTGGATGACTCCTGCCTGAGTCAGCCACCACTATCATAGTCGCCAAACAGTGATTTTCTATTATCATTATCTCTTAGTTTGTTTTACTAAAAGGAAAAACCTTCATCTATCACCAGTATAGAGTCAGGGATTTGTATTTTATTCAATTAACGCATTATTATGTTTTACCTTCATACTCTTATTGTTCCTGATTTGGTGGGAGATCTTTCAAGGTGGGTTCTTCCCTCTCTCCGTCTCTCATTCTTTGGATATATCTCCTCATTCTTATTTTATTTTATTTTATTTTATTTTATTTTATTTTATTTTATTTTATTGAGATGGAGGTTTGCTCTTGTTGCCCAGGCTGGAGTGCAGTGGCATGATCTTGGCTCACTGCAACTTCCGGCTCCTGGGTTCAAGAGATTCTCCTGCCTCAGCCTCCTAGCTGGGACTACAGGTGCCCACCACCATGCCCAGCTAATTTTTTGTATCTTAGTAAAGACGGGGTTTCATCATATTGGCCAGGCTGGTCTCAAACTCCTGACCTCAGGTGATCCACCTGCCTTGGCCTCCCAAAATGTAGGGATTACAGGCATAAGCCACCGTGCCCAGCCTCTTTTTGTAATTAAACAAATTTTATTAGAGACAAGGTCTTACGTTGTTGCCCAGGCTGGAGTGCAGTGGCATGATCATAGCTCACTGCAGCCTCAATCTCTTGGGCTCAAGTGATCCTATCACCTCAGCCTCCTGAGTAGCTGGGACCACCGGCACATGCCACCACTTCCAGCTAACTTTTAAGTTTTTTGTAGAGATAGGGTTTCACTATGTTTCCCAGGCACATCTCAAACTCCTGGGCTCAAGTGTTTCTCCCACCTTGCCTCATTCTTTGAATATTTGCTTGGCACAGCGAGCAGTTCCAGACTCACTGTGTACTTACCCTGCCTCAGACCTAGAATCAGCTGTTGATTTTTATGGAGGAGATATTTACAAAACCAAAATCTAGGTGTTTAAAATGCTCATTGCTATTGGGATGTCATTGTTTCTAGGCTTTCTCAGTGGAGTGAGACCTAGAGAAGATATGTATGTGTATACGTCTACACACATACGCATACACATACATGCATAACTTTTTAAAAAACTACCTCCCACGTGCAGGTGCATACAGATCTGGCCAAAGCGGGCGGGAGAAGAGCTGGGGGAGCAGTGGTGACCATTCCCGCAGCACCCTGGGAGTTTCCATCTTTATGTTTCTATAGCTGTCTTTGTATATGGATTAAAACCTATGGCTTCTCATTAATTTCTCCAATTCTCATCTGAACCCTCAAGATTCTGTCTATATTTCCATGTTAGTAAAATTTCAAAAAGTGACAAATCTAGCTCTAATTGGCTAGAGAGGGTGGGAGATTGTTTATATTATGGAATAAGAAAATCAGCAAGTACATTAAGGATGTACGTTAAGGATATACTTCCTAATTTTCCTATTCCATAATATAAACAATCTCCCCACCCTCCAGCTATCTCTTCTCAACGTTTTTTAAAAGGTGAAAACATTTTTCCTTGTCTTTTTAGAAGTAATCCCATTTATAAAAATGCAGAAATTTATTTATTCAACAAATTTTGAATGCCTGCTAGTGCAGGACATTGTGCAAGATGCTAGTGACACAGGTAAATCCTCAGTTCAGGGAAGCCTTAAAGCCTAGTGGGGGATTCAGAACACACTTTCACGCTGATAAAAGGATTGATTAGAAGACCCAATGGGAGCCCCAACCCTAAATTGGAGGGCCCGGGCGTGGTGATTGAGAAAGTGAAGATTTTGTGTGTGTAGGGATGGGAGGGTGGGAGGGAGGTGAGCATTGACCTCTCTTGTCCATAAACAAAACAAGACCAAGGGATTAATCATTATCCACTAAAATGTAATAGAGGTGACAGGAAATTTTGGGGTAAATTTTATTCCCTGTGTTCCAGGTTCATGTTCAGTGGTTTACAACAACTGTGCTGTATGTCATGGGCAGGAGGGTGTGAGAGGTGGTAGCAATGTGGCATGCTGTTCTTGTTGACAGACTTTTATAGTGAGGGACACTGACCTGCATGCAAATGCTGTAAAGCAATAAATAAGGGTGGGGAATGCAGTTTCAGGGATGATAGAAGGGTGGAGGGTGGGGTGGGCAGGCCAGTGAATTGTAGACCATAGACTAGAACAGAGGTCAGCAGGCTGTTTCCATAAAGGGCAGATAGTATTAATAAACATTTTCAGCTTTGTGGGCCATGCGTCTGTGTTGCAGCTACTCAGCTGTGGTGTAGCATGAAAGCAGCCCTAGGTAATATGTAAGGGAATGAGCACGGCCCTGTTCCAACAACCCTTTGTCTAAGAAAACTGCTGATCCCTGGACTAGAATGTAAACTCCACAAGGGCTCAGACTTTGTTTTTCGTTTGTTTGTTTGTTTTGTTCTCAACTCTCCCATGCCCTAGAAGAATATCTTGTATGTACACAGTAAATACTTGATCATTGTGTTGAGTGGATGGAGTTGGAATTAGCCACTGCTCCAAATGGAAACTCTTGGCATTTATGACTGGACATTGTTGTTGTTTTCTGTAATGCCAGGGTTTCATCCCAAAGTAGTAAGCCAAGCTCTTTGTCTTAGAACATTCATGTTGAGGTTTGGGTTAATCATTTAGGATTGCTTGGTCTTTATTTGAGTAGGTATTTTAGAAACCTGGAAAGCTTTTCTGACAGTGGAGCCTTAGTGAATAACAAGCTTATGGTGATTTTAGAGGCAGTTATTAGGGACCTGTTTATAAAGAAGATGCATCAAGAGCTATAGATAAATGCACCTTGAAAATTTGCCCAATCATTAGTATGTTGTTTTACACATTTAGAGGGAAGAGTCCACTGAAAGAGTAAGAGATTTTTCTGTTAGATCTTGCTCCTGGTTTACCTAACTCCCATTGTCTTTGTGCAGCGTTTCACTGAGAGATACCCCAGTTAATGAGCAAAGTGAAAGCTACATTTCACTCTTGTACCCACCAGCCATTGTACAATTGTGATAGTTCAAGTACAACAGGCAGTAAATGCTCAGGGAGTCTTGGGTTTAAGCACTGTGGTGCAGTTGCTTATCACTCATAATTGTATAGGATCATAGGATTGGCCTCTGTGCTAATCATTATTTGAGAATGAAATAGTCTTTGGCTTTGACCTTCCATTTGGAATAGATATTACTTTCTCTGTGGAATATATTGTAACTTACTTATCAATTCTAAGGAGAGAATGGGCATAGATACCTGTGTTTTGAAAGGAACAAGCCAGGCCCCACCCTGAAGTCTCCTTTCTTCTTCTTCTTTTTTTTTTTCTGAGACGGAGTCTTGCTCTGTTGCCCAGGCTGGAGTACAATGACGTGATCTCGGCTCACTGCAACCTCCACCTCCTGGGTTCAAGTGATTCTCCTGCCTCAGCCTCCCGAGTAGCTGGGATTGCAGGCACCCACCACCGTGTCTGGCTAATTTTTGTATTTTTAGTAGAGACGGGGTTTTGCCATGTTGGCCAGGCTGGTCTAGAACTCCTGACCTCAAGTGATCCACCCGCCTCGGCTTCCCGAAGTGCTGGGATTACAGGCATGAGCCACCACACCCGGCCAAATTCTCCTTTCTCCAGTTCCTTCACTTATCATTCTACTTGCTATCTTTAGGAGAAAATCAAACTATTTGCTGTCTTCTTGGGTCTCAGCACAGTCAACACTGCCATAATTTTTTCCACCTTCCTTCTCTATCTGAATATTCACTACCCTCAGACATCCACTTTGTTTGAAACGTGCTTATGTATGTACCACGTCTTCATATTCTTAAAGGATGACCCTACCAAAGTGATGTCTTCTCCTTCTAAACTTGGAATTTTCCAGTGTATTTATCTGACTCTTAACAAGGAAGAAAATGATATATCTTGAGGATATATCTTTTACTTTTCTAAATGGATTAAGGCTTTTTTTTTCTTTCGGTCATGTTTTCTTTTTATCCTGAAGTGCTTTATCCCAGCCTCGATTTCTACTTAGATGTTTCTTGGGCTGATTAGATTTTAGCAGTGAGAATACTTCTACCGGTATTCCACAAATTAGCGACTTATTAATTGTGTAGAATTTGACTAGGTAGCAAATGTGACCACTTGAAGATACAGTACTGATCATCAAACAGTACTCAGAACACGCCATGTATTTCGTTTCACACTGTGTTAAGAGCAGTAAGTGTAACGGAGATGTTTCACAAGAATCTGTTAGTTATTTCAAGGAACGTTAAATGTTGAATGTCATTTTCCAGAAAATATAAATGGGTTAGAGAATAAGTGAAAGGAATTTAGAGGAATCTATGCCATTTTTCTTGTAGGACTTGACCAGTGATTAACATCCATTATATATTACACATCAAATCAACAATCTTTTTTTTTTTTCTTTAAGTAGAGACAGTGTCTCCCTATGTTGCCCAGGCTGGTCTCAAACTCCTGGCCTCAGGCAATCCTGCTTTGGTCTCCCAGAGTGCTGGGATTACAGGCCTGAGCCACCATGCATGACCTGTTTTGTTTGTTTGTTTTCTTTAAGAGTTGGTTTGTGCTTGTGTTCTATTTGTAATTTCATCAACCTTCATTGAGTATATTCAGTGCCTACCCTAAATTAATAGAACCTGACTTAAAATGGAATAGTAAATCAGTCTGTTTTTGTGTTTACAG
Seq C2 exon
TGGGATCATGAAACCTGGTCTCAACGCCATCCTGGGACCCACAGGTGGAGGCAAATCTTC
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000118777-ABCG2:NM_004827:2
Average complexity
IR-S
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion (1st CDS intron)
No structure available
Features
Disorder rate (Iupred):
C1=0.025 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0000522=ABC_tran=PU(2.6=5.9)
A:
NA
C2:
PF0000522=ABC_tran=FE(13.2=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
- Pre-implantation embryo development
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)