DreINT0026248 @ danRer10
Intron Retention
Gene
ENSDARG00000076270 | adamts13
Description
ADAM metallopeptidase with thrombospondin type 1 motif, 13 [Source:ZFIN;Acc:ZDB-GENE-070814-7]
Coordinates
chr8:45264787-45265071:-
Coord C1 exon
chr8:45264988-45265071
Coord A exon
chr8:45264912-45264987
Coord C2 exon
chr8:45264787-45264911
Length
76 bp
Sequences
Splice sites
5' ss Seq
GAGGTATAA
5' ss Score
5.96
3' ss Seq
AAGTTTGTTTTAATCCACAGCCA
3' ss Score
6.55
Exon sequences
Seq C1 exon
GCCTCTGAGCTTTTGAGAGATGTTACCCTCGGTGCCAATATAAGGGTTCACCTTGTCCGTATGATCATTCTTACAGAGCCAGAG
Seq A exon
GTATAAGTGACCTAATGTTGTACACAACAGTTATCATGTTAGCCACTAGCAAAATAAAGTTTGTTTTAATCCACAG
Seq C2 exon
CCAGACATCCAGATCTCAGAAAACATCACATCATCTTTAAAAAGTGTTTGCGAATGGGGTCAGAAGGTCAATCCTGATGCTGACAGTGATCCTTTACATGCAGATCTACTGTTATATATTACCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000076270:ENSDART00000146364:4
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0142114=Reprolysin=FE(13.6=100)
A:
NA
C2:
PF0142114=Reprolysin=FE(19.9=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCCTCTGAGCTTTTGAGAGATGT
R:
AGGATCACTGTCAGCATCAGGA
Band lengths:
177-253
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]