RnoINT0013314 @ rn6
Intron Retention
Gene
ENSRNOG00000005780 | Adamts13
Description
ADAM metallopeptidase with thrombospondin type 1 motif, 13 [Source:RGD Symbol;Acc:1311594]
Coordinates
chr3:5525538-5525974:+
Coord C1 exon
chr3:5525538-5525621
Coord A exon
chr3:5525622-5525849
Coord C2 exon
chr3:5525850-5525974
Length
228 bp
Sequences
Splice sites
5' ss Seq
GAGGTGGGT
5' ss Score
7.07
3' ss Seq
GCTCTTTGGTTGTTCTCTAGAAT
3' ss Score
7.58
Exon sequences
Seq C1 exon
GGGTCAGAACTGTTGAGAAACCCGTCCCTAGGGGCTCAGCTCCAAGTGCACCTGGTGAAGCTGATCATTCTCTCGGACTCAGAG
Seq A exon
GTGGGTACAAACCCTAACTCTACTCCCCACACCCTTTCTGGAAGAACTGGTAAGAGGCTGGTAACTGTGGGACTTAGCTGGACTTCTCAGAGTCTCAGTTTCTCCATCTGTGAAGTGGGGTAGCAGTAGAATCGTTGCAGTATGGACCAGCTGAGAGGTACGCTGGCAGCAGTCAGCACCATCCTTGGTCCCACTTCCATAGAAATGGGCTCTTTGGTTGTTCTCTAG
Seq C2 exon
AATACTCCGAATATCACGACCAACATCACCTCATCCTTGATGAGTGTCTGCGAGTGGAGCCAGACGATCAATCCCCATGATGACAGGGACCCAAGTCATGCTGACCTGATCATCTATATAACCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000005780:ENSRNOT00000007640:4
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.151
Domain overlap (PFAM):
C1:
PF135821=Reprolysin_3=FE(21.8=100)
A:
NA
C2:
PF135821=Reprolysin_3=FE(33.1=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GTCAGAACTGTTGAGAAACCCGT
R:
TGGTTATATAGATGATCAGGTCAGCA
Band lengths:
206-434
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]