MmuINT0011191 @ mm10
Intron Retention
Gene
ENSMUSG00000014852 | Adamts13
Description
a disintegrin-like and metallopeptidase (reprolysin type) with thrombospondin type 1 motif, 13 [Source:MGI Symbol;Acc:MGI:2685556]
Coordinates
chr2:26977966-26978423:+
Coord C1 exon
chr2:26977966-26978049
Coord A exon
chr2:26978050-26978298
Coord C2 exon
chr2:26978299-26978423
Length
249 bp
Sequences
Splice sites
5' ss Seq
GAGGTAGGT
5' ss Score
9.65
3' ss Seq
GCTCTTTGGTTGTTCTCTAGAGT
3' ss Score
7.03
Exon sequences
Seq C1 exon
GGGTCAGAACTGTTGAGAAACCCATCCCTGGGAGTCCAGTTCCAGGTGCACCTGGTGAAGCTAATCACCCTCTCTGACTCAGAG
Seq A exon
GTAGGTACAAACCCTGACTCCATCCCATCATCCTTTCCTGCAGAACTGGTAAAGACTGGTAACTGTGGGGCTCAGCTGGACAGACAGCTAGCTCTCCAGGAGCGTCTCAGAACCTCAGTTTCTCCATCTGTAAAGCGGGGTAGCAGTAGAATTGTTATCATATAGACCCACTATAGAAACATGCTGGCAATACTCAGCACCATCCTTGGTACCACTTCCATAGAAACGGGCTCTTTGGTTGTTCTCTAG
Seq C2 exon
AGTACTCCGAATATCACGGCCAACATCACCTCATCCTTGATGAGCGTCTGCGAGTGGAGCCAGACGATCAACCCCCACGATGACAGGGATCCAAGTCACGCTGACCTGATTCTCTATATCACCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000014852:ENSMUST00000102891:4
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.048
Domain overlap (PFAM):
C1:
PF0142114=Reprolysin=FE(13.0=100)
A:
NA
C2:
PF0142114=Reprolysin=FE(19.7=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GGGTCAGAACTGTTGAGAAACCC
R:
GGTGATATAGAGAATCAGGTCAGCG
Band lengths:
207-456
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types