GgaINT1005476 @ galGal4
Intron Retention
Gene
ENSGALG00000003028 | ADAMTS13
Description
ADAM metallopeptidase with thrombospondin type 1 motif, 13 [Source:HGNC Symbol;Acc:HGNC:1366]
Coordinates
chr17:6909637-6909930:+
Coord C1 exon
chr17:6909637-6909720
Coord A exon
chr17:6909721-6909805
Coord C2 exon
chr17:6909806-6909930
Length
85 bp
Sequences
Splice sites
5' ss Seq
GAGGTAAGC
5' ss Score
9.85
3' ss Seq
AACATATGCTTTAACTGTAGGTG
3' ss Score
8
Exon sequences
Seq C1 exon
GGGGCAGAACTGCTGCGAGATGCCTCACTGGGTGCTCATTTCAGGGTTCATTTGATGCAAATGCTTGTTTTGAGGGAGCCAGAG
Seq A exon
GTAAGCAGGGAGGATTCTGCCTGTGTTGTCTGGGGTGGGTTGCTAAAACCTGTATGCAATGTGCAAACATATGCTTTAACTGTAG
Seq C2 exon
GTGAATGTGAACATCACAACAAATATCACCTCCTCGCTGATCAGTGTTTGTGAGTGGAGCAAGAAGGTCAACCCCCAGAATGACTCTGATCCCCAGCATGCTGACATCGTCCTGTATGTGACCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000003028:ENSGALT00000004792:4
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.024
Domain overlap (PFAM):
C1:
PF0142114=Reprolysin=FE(13.1=100)
A:
NA
C2:
PF0142114=Reprolysin=FE(19.9=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CACTGGGTGCTCATTTCAGGG
R:
GATGTCAGCATGCTGGGGATC
Band lengths:
167-252
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]