DreINT0036875 @ danRer10
Intron Retention
Gene
ENSDARG00000057782 | baz2ba
Description
bromodomain adjacent to zinc finger domain, 2Ba [Source:ZFIN;Acc:ZDB-GENE-070615-37]
Coordinates
chr6:11743291-11743665:+
Coord C1 exon
chr6:11743291-11743513
Coord A exon
chr6:11743514-11743602
Coord C2 exon
chr6:11743603-11743665
Length
89 bp
Sequences
Splice sites
5' ss Seq
GAGGTAAAA
5' ss Score
7.3
3' ss Seq
AGTTTGTGCGTGTGCGTCAGGAT
3' ss Score
4.47
Exon sequences
Seq C1 exon
AATGAAAACAATCTACGCAAAGCGGACAGGGAAACGGGAATCAATGACTGGAGGGGAGGAGCCTCACGCTGCCGGAGGCTCTGCCATCGGTCACAAACGCAAGAGGAAGGCGGGCGATAGTGATGATGACGATGATGAAGATGAGGACAGCGATGAGGATGAGGATGATGAGGAGGAGGAGGAAGAGACTAAAAAGGGAAGGAGGGTGGAGACATGCGATGAG
Seq A exon
GTAAAAGACATTCTTTTCAATGCATTTTCATCAATTGATTGCTCATCATATAATTGATTATTAATATTGAGTTTGTGCGTGTGCGTCAG
Seq C2 exon
GATGAGGGAGACCCAGCCACTAGTGTTGAAGAGCTGGAGAAACAGATTGAAAAGATATCAAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000057782:ENSDART00000151044:25
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.933 A=NA C2=0.857
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ATCGGTCACAAACGCAAGAGG
R:
TCAACACTAGTGGCTGGGTCT
Band lengths:
167-256
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]