RnoINT0024829 @ rn6
Intron Retention
Gene
ENSRNOG00000056984 | Baz2b
Description
bromodomain adjacent to zinc finger domain, 2B [Source:RGD Symbol;Acc:1309801]
Coordinates
chr3:45990175-45992152:-
Coord C1 exon
chr3:45991909-45992152
Coord A exon
chr3:45990238-45991908
Coord C2 exon
chr3:45990175-45990237
Length
1671 bp
Sequences
Splice sites
5' ss Seq
GAGGTAATC
5' ss Score
7.05
3' ss Seq
CTGTGTTTTATTATTTTTAGGAT
3' ss Score
10.7
Exon sequences
Seq C1 exon
GCTTAGGATAATCCATGCTAAGAAAACAGGCAAGAGAGATGCTTCAGGGGGCATTGATCTTGGGGAAGAGCAACATCCCTTGGGCACGCCGACTCCAGGACGCAAGCGGAGAAGGAAGGGAGGAGACAGTGATTATGATGATGATGACGATGATGACAGCGATGACCAAGCCGATGAGGATGAGGAAGATGACGAAGATAAGGATGACAAAAAAGGAAAGAAGACCGATATCTGCGAAGATGAG
Seq A exon
GTAATCAACTCAGGTTCATGTATGGGTGTCAGTAGGAGCGGTGCAACCCGCCAAAAAGCAACTCAAAATTGAGGGCCTCAGGTCTGTAATTTGAATTCAGTTTGTAACATTCGTTTGCCTCAGTTTCTTCATCTGAAGATGATTTCCTCCTCCTCCTCTCTTTCTTTTCTCCTCTTTCTTTCTCTCCCCCTCCCCCAACCAGGTTTGTCCACGCCATGCTCCCAGCCTGAATGTATGTTATATTTGTCTCTTATTGTTTTGTGGTAATGAAGGAACCAGTTAGTGGCGTGACTGGATATGGAAAGAAACTGGATATGGAAGTAGAGAAACTGGGTGTGCGTCGTGTGTGCAGATACGTCACTCAACAGGTGTCTGACAGAGTCCCCTAGGCTAGTATCACCTGATGACATTGTTGGTGGCTTGCTTTGTGTCAGTCTTTTCTGTGATACTCAAGTCATGAAGTCACTAAATGTATATTGCTCTGAATGGATCCCTGCTCTTCGGGACACATGGCTGTCATCATCCCTCGAATTCTCCACAGAGCTGTGTAGATTGATTTTCAGATGTTCTCTCTCACACACCACCGACACCACGCTGTGCTTGCTCACCGCTCTTGCCTTGTCGGTGCTGTCAGGCCTAGTGAATGGTGCATCTATCCAACATTAGTCTCCGTCAGCTTTCCTAGGAGACGGGCACAGCCCTGCCCCTGCACCATTCGTGAAAAAGCATGGTTGCTTTGGGTTTTCTTTAAAATACAGAATAGATAGATAGAATGTTAATCGGTGTGATAGGGAAGATGTTTATAGCGTGTACAACATTCCTGTGCAGGTATTTGGAGGAACAAACCCCCACGAGCTCTCTGCATCCATTAACCAAGACTTTATATATATTGGGGTGGACATGAGTCAGGGAACATAAGAGAGAAGCCTGTGTGGGAACAGCCACACCATGGTGAGAGCTCGTGTGTTTCGGACATTGTTTCCTCATGAAGTGCAAAGTTGGAGGGGTTATGTTTGTCGGGTGCATTATTACTATTTTGTTACCTTATTCGATTTTCTATTGATTGGATTGTGATTTTTGTTTTAGTGAAAGAGTCAGGTTTTAAGGGTTTGGGGCCTGTTGTCTTCGTGCCAGTTAGAATTCATGTTACTTTTAGTTCAGACATAACAACCGTGTAACTCTGCCCGGCCTTCAGTAAGAAGGGAATAACAGATGGTGGTGAAACTCTGAAGTCCCCTCCCCTCCATTCCGCCCCATCGTTAGCTGCAGTCTCTTCTGATGTACATGCAGGAGTGCTTGTCGCTTTTGAAAAAAAAATGCTTTTTATTGGGAGAAATGTTAGGAAGAGATGACCAGAGGAATATCAAAAATTAATTGATGGACACAGCCCTCACTTTTTATCTTTAAGCAAAACTGCTGGGTCTGAGGGCACAGCTCAATGTTAAAATACTTGCATAGCACCATAAAGCCCCAGCACTGCAAACAGAAAAACAGAAAAATATCACCAAAAGAGACCCTCGGAGACCCTGTGCTTGCCTCGTTTGCTACTTTATATACGTGCGTGCGTGCGTGCGTGCGTGCGTGTGTGCGAGCTTCCTACATTCATGTATTTGATGATTAGAGAGTGAAACTTTCCAGCAGGTAAGTAACCCTGTGTTTTATTATTTTTAG
Seq C2 exon
GATGAAGGTGACCAAACAGCCAGTGTTGAGGAGCTCGAAAAGCAGATTGAAAAACTGAGCAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000056984:ENSRNOT00000081302:22
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.854 A=NA C2=0.952
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GGATAATCCATGCTAAGAAAACAGGC
R:
CTTGCTCAGTTTTTCAATCTGCT
Band lengths:
302-1973
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]