GgaINT0050420 @ galGal3
Intron Retention
Gene
ENSGALG00000012579 | BAZ2B
Description
NA
Coordinates
chr7:38204111-38206174:-
Coord C1 exon
chr7:38205931-38206174
Coord A exon
chr7:38204174-38205930
Coord C2 exon
chr7:38204111-38204173
Length
1757 bp
Sequences
Splice sites
5' ss Seq
GAGGTGGGA
5' ss Score
4.3
3' ss Seq
GGTATGTTTGGTGATTATAGGAT
3' ss Score
2.52
Exon sequences
Seq C1 exon
TCTTAGAATCATTCATGCCAAAAAAACTGGCAAAAGAGATGCTACAGGAGGTGGTGAAGTAGGAGAGGAGCCGCATTCTTTGGAAACACCAACACCAGGCCGCAAACGGAGACGAAAGGGTGGGGATAGTGATTATGATGATGATGATGACGATGATAGTGATGATCAGGCAGATGAGGATGATGAGGATGAAGAGGACAAAGAAGATAAAAAAGGAAAGAAGGCGGAAGTTTGTGAGGATGAG
Seq A exon
GTGGGAGATTTTAAATATTGAAATGGAACTAACTGGTAAATTGAAACTTGCTCCCCTTTTGTTTCCCTGCAACATTAGGGTTCTCTGCACCACTTCCCCAAAATCTTACAGTAAGAATGAAGGAAAAATATTTTACATCCATTTTATTTAAGTTTTTTTGAGTAAGTTGTTTTCAAGAGTGTGTTTTTCTTTTCTTGATAGCTTTCTGCTTGTTTTGGCTTCATCTTAATTTTCCTGAAATTTTGAGAGTTTGCACAAGATCCTGAGAACTACAGTATTTTTAGCAAATGAGCGCAAACTGATGTTGCAATTAGTGGAGAATAAAGGGCATTTTTAATTAAAAAGACACATTAAGTTGTATCTAATATTTGTCTATTTAAAAAATGTACCTGTGACGTTGCCACGTGTCTTTTCATAACTTCTTGAGGATAATGAATAATGCAGAAAGTACATTTCAGTGCTCAGTTGTACCTGATACACACGTTGATAATGTTTTTACTACTCAATATTAGATGAGGTGCGGGAAGGATCATTGAACGTTGTTAGTTTGAGCTGAATTGTATCTATTGTAGACAAAATGAGTTTTTGTAGCATGCCATGGGCTCGTAACATTGACTGCAGAACTCCAGCTTTTCATGCTGCATGAAGAGACAAGCAGTACAAAATACCATTGGCTCTTTGAACAGTACATGCATGCAATGTGTGAACTCAGATTTTTGGAAACACCCTTCGTTAGTGACCCAACTAGTTTCTAGAGTAGGAACAGCTCTTTTTGCTGCTCCTCTGAATGTGTTACAATTACTTAGTATGAGTTTAAGAAAATACCTTAGTGGTATAGCATACTCTTCTTACAAAATAATACTTCAGAGTTTAAAATAGGTAATATCTAGGAATCTAATCCCACATCTTTCTACTCATCTTTTACCCTTAAATACAGTCCTACAGTGTGGTACTCTGGAAGTCCTGTAACTCCTCCAGAAAAAATAGTCCATTGCATTTGTGCTATATGTAGTATTTTAGAAGGCTTCATTCTGATTCTCTAATTTTAGAGCCATGGAATATGAAACCATTGCCTTATGTTGTAAGTAATTGGGAGCACCTAGGATGATGATGATGATTAAATTCTTCATTATCCCCAAAGATTTTTCTCACCTATATAAAAGCTCTTCTAATGGAAATAAATGGTATGTTTAACTACACTGGGAAGAAAGAACCATAGGCTTGGTGCATTCCTCTTCAAAAATCAGGAAGGATAATACTGGAACTCTTACAGCGATTTGTCATTTAAAACGGCCCTACAGTTTCTTGTAGACATTGAAATAAGTTCCAAGTATGCTCTGATGAAAGACTGACTGATAAAACTCAACAGATTGTTATTTCTTGCATGAAAAACTCTTTGAAATATATACAAATATTCAAAAAGCTTTGTGGATTATAAGACTAAATTCTGTAGTTCTTTATACACAAAGAGAATTATCTCTTCCAATAAAATAATGTTTTTAGCCAACGTTTTGTAACCATCTTTCTCCTACATATGTATCTGGGATACTATTGAAAGGTAGGTCTTTTTTCCAGCTATGTTGTTCCTAGTCAAATACATTCAACAGGCAAATACTTGTACATTTTTACCCTTAGGATTTGCCTTTCACATCTGAGGTCTTGTTTTCTGTTAAATCTTTTCTACTGTAAAGTTAATAAGAGATAGTATGATTTTATCTGAGATGGTTTTGGTGTGATGGTATGTTTGGTGATTATAG
Seq C2 exon
GATGATGGAGACCAGACAGTGAGTGTTGAAGAACTAGAGAAGCAGATTGAAAAACTGACAAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000012579:ENSGALT00000037699:23
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.902 A=NA C2=0.952
Domain overlap (PFAM):
C1:
PF0334410=Daxx=FE(20.9=100)
A:
NA
C2:
PF0334410=Daxx=FE(5.2=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AAAAACTGGCAAAAGAGATGCT
R:
CTTTGTCAGTTTTTCAATCTGCTTCT
Band lengths:
286-2043
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]