MmuINT0024153 @ mm9
Intron Retention
Gene
ENSMUSG00000026987 | Baz2b
Description
bromodomain adjacent to zinc finger domain, 2B [Source:MGI Symbol;Acc:MGI:2442782]
Coordinates
chr2:59756496-59758595:-
Coord C1 exon
chr2:59758352-59758595
Coord A exon
chr2:59756559-59758351
Coord C2 exon
chr2:59756496-59756558
Length
1793 bp
Sequences
Splice sites
5' ss Seq
GAGGTAATC
5' ss Score
7.05
3' ss Seq
CTGCATTTTGTTATGTTTAGGAT
3' ss Score
8.15
Exon sequences
Seq C1 exon
GCTTAGGATAATTCATGCTAAGAAAACAGGCAAGAGAGACGCCTCAGGGGGCATTGACCTCGGGGAAGAACAACACCCCTTGGGCACGCCCACGCCAGGACGCAAGCGGAGAAGGAAGGGAGGGGACAGTGATTATGACGATGATGACGATGATGACAGCGACGACCAAGCTGATGAGGATGAGGAAGATGAGGAAGATAAAGATGACAAAAAAGGAAAGAAGACCGATATCTGTGAAGATGAG
Seq A exon
GTAATCAATGTCAGGTTCATGTATAAGAGGGAACAGGAGGGTGCAACCTGCCGGAAAACAACACGAAATGGAAGGCCGTGGGCTTCTCATTAATTCAGTTTGTAACATTTACTTGCCCCAGTTTCTTCATCTGAAGATGATTTCCTCCTCCTCCTCTTCTTTCTCCTCCTCTCCCCCCCCCCCATCTTCCTTTGTCTTCCTCCTCCCCTCCCCCAACCAGGCTTGTCCATGCCATGCTCCCAGCCTGAAAGTACTGTTGAAGTTGTCTCTTAAATTGTTTTGTGCTAATCAAGGAACAAGTCAGTGCCATGGCTGTATATGGAAGGGCACTTGGACGGAAGGAAAGGAACTGGGTGTGCTTTGTGTGTACAGACACTGCACTCAGCAGGCGTCTGACAGTGGTCCCCTAGGCTTGTGTCACCTGATGACATTGTTGGCATCTTGCTTTGTGTCAGTCTTCCTCGTGATAGTTTGACTATCATGAAATCACTAACTGCATTTGCTCTGAGTGGATCCCTGCCGTTAGGAACACGTGACTATCATCATCCCTCCAGGCCTCCCTAGATCTGTGTAGACTGATCTTCAGATCTCTCACACACCACTGGCACACCGTGCTATGCCTGCTCACTGCTCTTGCCTTAAAGGGCTTTATCAGGCTTAGTGAAAATGATGTATATGTCCAGCATTAGTTTCAGGCAACCTTACTAAAGATGGATACATCACTGAGCCCTCACCATGAATGAAGAAGTTTGGTTGTTTGGGGTACTTTTTTTTAATATACAGAATAGATATCAAATGTTAATTGGTGTGATAGGGAAGATGTTTAGTGTGTGTAACGTGCCCATGAAGAATATTTGGAGGAACACTCCCGTGAGCATTCTGCACCCATTAGCTAAGACATATGTGCTAGGGTAGACATGAGCTGGGGGAGACAGAAAAGAGTGTCTGGGGACAGCACACCATGCTGAGCAGTGTGTTTTGGACATTGTTTCCTTGTGAAGTACAAAGTTGGAGGGGTCACGTTTGGCGGTACATAACTATTTTTTTACCTTATTCCAATTTTCTATTGATTGAATTGCTATTTTTGCTTTAGTAAATTCTCAAGCATTTGCCCTGTTTATCAAAAGACTGCTTTACACCAATATATACTAAGCATCTGTTTGAGAGTCGGGTTTTAAGGAGTTGGGGCCTATTGTCTTTTTGAAGTTTCTTTTATTCCAGTTAGAATTCATGTTACTTTTAGTTCAGACATAACAACCAGAATAACTCTGTCCCTGGACTCTGATAAGAAGTATATAAATAATAGATAATGATAAAACTTTGACAGTCTTTCCTCCTTTCCCTTCCATTCACTAGGTCTAGTCTTTTCTGATGTATATGCATAAGTGGTAGTGACTTTTGAAAAAAGTGCTTTGTATGGCAAGAAATGTCAGGGAAAGATGACCAGAGATATATCAAAAGTCAATTGACAGACACAGCCCTCACTTTTATCTTTAAGCACTACCATTAAACAAGCGCTGATCTGAGGGCACAGCTCAGGCAGCTCAATGCTGAGACACTTCTGTAGTATCCGTAAAGCCCTCAGCGCTGCAAACAAAAACGAAAAAAAATACCCTCAGAAGAGACGCCGTGCATCCTCGTTTACTACTCTATATGTAATTTATATATAATGTAGGTGTGTGGGGGATGTGGGTGGGTGTGTGTGTGCGTGTGTCTGTGGGTTTGATATGTTCGTGTATTTGGAGAATGAAACTTTCCAGCAGGTAAATAACTCTGCATTTTGTTATGTTTAG
Seq C2 exon
GATGAAGGTGACCAAACAGCCAGCGTTGAGGAGCTAGAAAAACAGATTGAAAAACTGAGCAAA
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000026987-Baz2b:NM_001001182:24
Average complexity
IR-S
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.854 A=NA C2=0.952
Domain overlap (PFAM):
C1:
PF0334410=Daxx=FE(21.0=100)
A:
NA
C2:
PF0334410=Daxx=FE(5.2=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GGATAATTCATGCTAAGAAAACAGGC
R:
TTTGCTCAGTTTTTCAATCTGTTTT
Band lengths:
302-2095
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types
Other AS DBs: