DreINT0041086 @ danRer10
Intron Retention
Gene
ENSDARG00000010758 | capn12
Description
calpain 12 [Source:ZFIN;Acc:ZDB-GENE-050419-245]
Coordinates
chr18:36708754-36711133:+
Coord C1 exon
chr18:36708754-36708831
Coord A exon
chr18:36708832-36710957
Coord C2 exon
chr18:36710958-36711133
Length
2126 bp
Sequences
Splice sites
5' ss Seq
CTGGTGGGT
5' ss Score
6.29
3' ss Seq
TAACATTTATGTTTTTTCAGGAT
3' ss Score
9.7
Exon sequences
Seq C1 exon
GTGTAAAGACTGGGACTTCGTAGACAACACTGAGAAGACGAAACTTGAATTGGCCAAAGTTGAAGATGGAGAATTCTG
Seq A exon
GTGGGTGATGTAAAAAATATGCGTAAGGGCTTTGCACACTTGAAATTGTTAACACTGGGTCATCCTTAACCCTGGAGAAAAGGACCCAGAATGGGTTATCTGTAATCATGTCACTATACTGTATATACTGTACTTGATGTTAGCAAATAATTCTGTGTATTCAAACATTTAATTCCTAAACCAACATTGTAATGTTGCCATTCCTTAAACACCTAAAAGGCATTTAGAGACTGAATACATTAAGTATTTCAGATGTAATTTTGTCCCATTCTTCCTGCAATCAAGTCTTTTGGTTATCATTGTCTTATTGAAATATGAACGGGCATCCCTGGACAAGAAGACAGTGTATTGTGCTCCAAAATCTTTATGTACTTTTCAGTGTTAACAGTGCTGGTAACAGTCTGCATTTATTTCTCCCCAAAAAAACTGAAATGCTAATACACATTTCCACTGTGTGATGGTCCATCCTAGATGCCATCCTAGAGGGTTTCCTCTTGGCACAGTTCTGTTTTCCCTAGCGTTTGTGGATGTAACAACATATTGTGGAATGTGAAAAAGGTTCCTGGAATCTTTCAATTATGTTATGCACGATTGAAGGTGAAATATCCAAAAGTCTTCCTATCTTTCTTTGAGGAACATTTGTTTTTAAACATTTAATAATTGCCTCATGTTTTGGCAAACTGATGATCCTCAGCTTATCTCTGCTCTTAAAGGATTAGACCTTTCTTGCATTCTGCTTTTGTACCAAATCATAATTACAATCACCTGTTGACATCCCCTGTTTCAAATCACATCATTAACCAATTTACCAATAACCAGACAAAACATTAAGTATTTTGTGTTTATATTGTTCGCAATTAAATTCAAGTGAAAGTTAATTTGGAAATCACTTTTCTTTTAATTTGCATTTACCATATTGTCCTAGCTTTTTCTGATTTGGGACATTTTTACATAAAATGTCGCCACATACAGTCGGTTTTTAGCTAAGCTTCACAAGATGCACAAAGAAAGAAAACAAAGACAGAAGTACAAATGATTGAAAACAAGGAGTAAAGTAAGGCATATAAAAATCTCTAGATCACTCTAGTTTACATGCTTTCCTTATTTTAATGTTTTAATTTTCCATTTTGCTTGACAAAAAATATTTTTATGATGCTTTAACTTAAATTAATAAGATAATCAGGTTTCAACTAAATGTTTATAAGTTATAAATTCAAAGTTTAATTTAATATGTTAGTAAGATTGTTTGTTGTAAGTTGAGATGACTAGGGAAGAACTAAAAAGTTTAAAGCAGCAATTATTTTTTTTACAGTGTAGGTTGCTGACATGACTCAAATTACACATGTAAAATATGTTTTAGAACGACAGTAAGGGGTTAAGCACAGTGTGAAATCCCTGCAAGTGTCCAGTCTCTGCAATTTTCACTCCAGATGTTATGAGCAATAAAATGGCTTTTACTTGTTTAAACTAGATTTAGAGTATATATATATATATATATATATATTTAAGTACACTTTAAAGAAGAAAGGCACATTAACAATGTTTTGGTAGACTGAAAATCCAAACATTTAAAAACAGTACAAAAAAACATAATTTGTATGGGAACATTACCATATATAAACAAGGAAAATAAAAATGTTTGTTTGTTTGTTTTTATATATAAAGCACTTTTACAATGTAGATTGTGTCAAAGCCGTTTAAAATGTCTTTACAAGCTCACTGCTCTTCTGATTTAAGTGTTTGCCAAAATGGAATCAGTTAAATGCCAAGAATTAAACAATGCTAACTGTCACTGCAGTCTTTGCATTTCTTAAAGTAATCAAAGGAAGGAAGGGATGAAAGGAATGGAAGTTCACCCAAAAATGAATATTCTGTCACCATTAACTCAGCCTTAACTCAGCCTTTTTTTTTCCTTCTGTTGAACACAAAAGAAGATATTTTGAAAAATGTTGGAAACTGGTAACCATTGCCGATCATAGTTGGTTACCAGTTTCCAACATTCTTTAAATTATCTTCTTTTGTGTTCAACAAAATATCAAACTACTATCAAACTTTTTGGGTGTATTATGCCTTTAATAAGTCATCGTGTTCAAATCTAATCTTTGTTAACATTTATGTTTTTTCAG
Seq C2 exon
GATTAGCATAGAGGACTTTTGCAGATTTTATAATACAGTGGAGATGTGCAGTGTGGATCCAGACTCTATGTCGGGGGAAGAGAGTGAAGATACAAGCACCTCGTCCTGGACACTGAGCTTACATCAGGGAACCTGGGTCCCAATGTGCTCTGCTGGCGGCAGCCGACGATACCCAA
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000010758:ENSDART00000098972:8
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.208
Domain overlap (PFAM):
C1:
PF0064816=Peptidase_C2=FE(8.7=100)
A:
NA
C2:
PF0064816=Peptidase_C2=PD(6.4=31.7),PF0106717=Calpain_III=PU(15.7=40.0)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]