DreINT0041162 @ danRer10
Intron Retention
Gene
ENSDARG00000055592 | capn2b
Description
calpain 2, (m/II) large subunit b [Source:ZFIN;Acc:ZDB-GENE-050522-84]
Coordinates
chr22:26318657-26321701:-
Coord C1 exon
chr22:26321616-26321701
Coord A exon
chr22:26318726-26321615
Coord C2 exon
chr22:26318657-26318725
Length
2890 bp
Sequences
Splice sites
5' ss Seq
CAAGTAAGG
5' ss Score
7.66
3' ss Seq
GTTTTTCATCTCCCCTATAGTTC
3' ss Score
8.12
Exon sequences
Seq C1 exon
GTGAACTATCGTGGTCGCAAGGAAAAGCTGGTTCGTATGCGCAACCCTTGGGGACAGGTGGAGTGGACCGGAGCCTGGAGCGACAA
Seq A exon
GTAAGGTTTCATTACTGCAATATATGTGTTACATGCAGTCATGGAATTTCTGGAGTATCATGGAAATTTAAAGGGTCTGTTCCAGACATTTAAAGTTAGGGAAATTAATATATTTTTTATCCAATTGAATATCAAGGACTGTTTTGTTGCTTTATTTTTTTGTTTCTAATGAATTATAGATTTTGTTGATGTCTGACAATATGAAGTCATTCCAAAACGTGGGCTACATATTGTTTGTAAAAACATGCTAAGTAGGTATATGCAGATTTAAAAATGCAGTCCCCATCAAGCCAAAATATGTAGGCCTACATATTTTACATGATTATTCTCTCGTTCAATCATACTATAACATAAAGCCATTTGTTAATTCATTGTTTTTAATGAAAATGTTTTTCATGTATTGCCGGTTGTTATGGTTAGGCTATTATTATAGCCATTTTATTTCTTGCCCCCTTGGCAACTGGTTTAAAGGCATAGTTCACCCCAAAATGAAATTTTGCTCACTGTTTACTCACCCTCAAACGGTTATAAACCTTTATGAGTTTCTTTCTTCTGTTTTACACAAAAGAAGATATTTTTAAGACGGCTGAAAACCTGTTATTATAGACTGCCATAGTAGGAAAAATAAATATTATTAAAGTTAATGTTTTCCAGTTTCCAACATTCTTTAAAATATCTACTTTCTTCTTTTTTGAGTTCAAAGGAAGAAAGAAACTTAAACAGGTTTGTGAGAAGTGAAGGGTGAAAGAAAGATTTTCATTTTTGGGCGAATATCCCTTCAAGTCTATTACAGTCACCAACCATACCTGTTAATTAAGGCCCCATTTACACTAATATGTTTTAGTTTTTAAAAAAAAGTTTTGCTTCGGTTACGCCTTCCATCCACACTACCCCAGAGTTTTCAAGCCCCGAAAACACAACATTTTGGAAGTGCTGAAGAGGCGTTTTTTGTTTTAAAATGCTGCTGCTCTGTGTCAGTGTGGATGGGGAAAACGGAGACATCTGAAAACGGTAGCGTGGCTGTAGACATTCGCCTATCTGATTGGGCTTTTTCTCAATATTTAGTGCACAAAGTTTAGTCTTACATCCTTTATTAGACTTAGCAATTTTTATATAAAAAACAAACTACCGAGGACACTTCGGTAAATCCTAAAAGGGAACAGGGTACTTTACAACCTCAATTGCATCACCCTGGCTATGATGTAACACTATTTTAACAATAAAATAAAAACATGAAACAAGGAACTGCCTGTTTTCATTTTGATATTAACAACTTAACAGACACTAAAAATGTTAAGGCGTCGTGTAGTTGCATATTTATATGACCGTCCTCTTCACTGTGTGCAAATTTTATAACAAAACCTATAACCTATATAATAAGAGACTATAACATAACTGCCTCCTTTCATTTTCATTAAAAAATACGAAACATACCCAGTCTGTTTTGCTGAATATCAGTTTTAATAATCAATAATGGGCATTATAAAAGTATAACATACAATAAGTTATTTACAAAATAGGAAATAAAGGCAAACAATCAGTCAAATGTTTATATTCAGTGTACGTGGTTACATAAATTAATATAACATATCTTTGCGCTCAGCCAAAACACGTTACCTAGAAACAAGTAATAGATTCAAAATACAAAAGAGTCATTAGATAGAGACGAGATGAATAAAATATCATGTTTAACAACTTTAGTGATATGAGATGCAGCGGTAGACCCTTAATGAACTGCCCGATGTGCACTGCTCTCACCTCAGGAGGTGTGCTCAAGCCACACGCTGACTGCCTGGAGCTCGGACCTCTGCATATGCTGAAGTGCAAGTCAGAGTGTGTGCATGGTCACATTATGTGCGTTGTCAGTGGTGTAATGTAGACGGAGAACTTTTTAGAAACGCTAGATAAAACACCAGTGTAGATATGGATTGTTTCTGTTCTAAAAAGGCGTTTTAAAACTAACATATTAGTGTAAACTAGGTCTAAAACAAATATTGCTAGCAAAATGTCTTGGACTAATACAAAATGACTACTCTAATACAGTGTGTTAGACTGTGTAATCTTGTTCCAATCTGAGGTAAAAAAAAAAAAAAAATTCCATTGTTTCTTAATGGTTATTAAATTAATAGCAAACACAAACCACCTTGTTTTTACATTTATTATAAAAAAAATAAATTATTCAGTGAAAGTCAGGGATTTTTACATTTGGCTAAGAATAAGAACCCTGTTCTTAGCTAAATGTTGCTGAAATTACAAAAACAAAAAACATTTTATTCAGAAATATGCTAGGTTACATATACATTTAAATTTGAAGCCAATATCCCAGACGAGTCCCCATCTATTCTGGGTCTGTGTTAAAGGCGTCTGTGGGTAGTCATTGAACTAGTGATTGCTTGATTTCTGCACAATACTGTATACTGGGAAAAAATAGCATTAATTGGTAAAACGGGTTAACTCTAAAGAAGAGAAATCGACAAGGCTGTTGTAGATATCAAAGAGTCAGTTCACCTAAAAGTGAAATTGTGGTTTCACAAAATAACATATATTAAAGAATGTTGGAAAGCGGCAGCCATTGCTTGTGGGGAAAAGTTTGTATTAAAGTTGTGGTTGGACTTGTTTTGTGGGCGGTCATGGCAGTCTTGACATTCCTTGGCATGACACCAGAGAGCACTTCAAAAATAAATAAATTACCTAACAGCCTCAACTCAAGGTTGATAAACAATAACACAATATTTGTTAGAGCATAAAGTGTGTAAACATCTGACTGTCTGAGACTTACAGTTTTATAGAATTGATCAATTTAATGAACTTACGGAGAGATTATGATAGCATCACTGTTCAAACACTGGACTGATGGTTATCTGAATAGTGTTTTTCATCTCCCCTATAG
Seq C2 exon
TTCACCTGAATGGAACAGTGTTGCGGCATCAGAGCGTCCAGACGCCAGCGCTGAGGATGGTGAATTTTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000055592:ENSDART00000077958:7
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.034 A=NA C2=0.375
Domain overlap (PFAM):
C1:
PF0064816=Peptidase_C2=FE(9.4=100)
A:
NA
C2:
PF0064816=Peptidase_C2=FE(7.7=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]