RnoINT0029129 @ rn6
Intron Retention
Gene
ENSRNOG00000003468 | Capn8
Description
calpain 8 [Source:RGD Symbol;Acc:620085]
Coordinates
chr13:101016376-101018137:+
Coord C1 exon
chr13:101016376-101016461
Coord A exon
chr13:101016462-101018062
Coord C2 exon
chr13:101018063-101018137
Length
1601 bp
Sequences
Splice sites
5' ss Seq
TAAGTATGT
5' ss Score
4.58
3' ss Seq
CATTTTTCCCCCCTCCACAGTGC
3' ss Score
10.35
Exon sequences
Seq C1 exon
GTGAATTTCCATGGCCGTCCAGAGAAGCTGATCAGGTTGAGGAACCCATGGGGTGAAGTGGAGTGGTCGGGAGCCTGGAGTGATAA
Seq A exon
GTATGTCCCTCTTCCCCTTTCCCAGTGCTCCGCTATCCCTGGACCAGGGTGTCCTTTAACACACAGTAGACACAGTGGGACACATTGCTCCCTGGGTTCTGCAGGGCTTCCCTTCTGTAGATTATACAGTCTGCTGAGGGAACAGTTCTGGGATGGGAAAAGCAGAATAGAAACCACTCTGCCGACATTTTTAATCCTGGATCTCTGCTTTGGCACTTGAAACGTTGGCAGCTCCATGGAAATTTGCCTAGAGCTGAAGGCTTACTTTATTTCCTGCCCGCCACACTGGGTGCTGCAAGGTCCAATCAGTAGCTCACAGATCTGATCGTTCCATGGCACAAACACTGCCCCCTCAGAACCAACAGAGAACTAAGATGCCAGGAGAGCCTGGATCCCGGGAGCCATGGCCCGCTGAGGCAGTAATGAATGGGAATGTCTCACTGTGAGCTCAGGACTGGATGGGTGCTGATCCCTGGCTGGAAGGATAGTCTTTGGGAGGCTTATCCAGGGATAAGGGGAGTCAGTCAGAGCACGTGAGGTCCTGAGATGGCTGTACTCTGGCACTCATGACTTTCATGTTCCTTGTCAGCTTGAGAACTGCCTGGGCTGTTTACCTGCTGGCAGTTGGAGAAGGCCACTGAAGGTCTGAGATGACATGTCTAAACTCGGCCAGCATCCAGCTGTGTTGTTTACTTTGAAAACCCCAACAGTGACAGTAAAAAAGTCAAGCCAACCAGGAGATTTAGATTAGATCTAGAGTTCTCCATCAGATCCCTAACCTTAAAAAACAAACAAACAAAAACAAAAACCAAGCACACGGTGGGACTCAGTACAAATTGAATGGATGTTCCAATGACTTTATGAAGTCCCAGAATCCAAGTGCTTAGAAGCCAGCTGGAGGGAGAGGCTGGGTCTGTCCTTCTTCTCTGCCAGGGAGGGAGGAATGGGGGCATTGATGAGTGTGCCCAGGGAAGAGCTTTGGTTCATTTTTAGGATTGGTAGTAACACTGTTCTCTTATCTAGATATTGCCCATGTATCTCAGGAAAACCCAAAGCTGTGAAGGTCAGGCAGCTGTAGATGACATTTGAAAAAAGCACTCGGATATCGCACTCGGATATCGCACAGGAAGGCCACCAGCGGGACACTTGAGGGAAATTCCTATAAATGTGGGCCTGGTAATCAAAGCTGCAGACTTAGGAAGTGGACAGTGTCTACGGACCCAGAGCTAGCTGGCCCCAGTCTGATAGGAGAAGAGACTGGCAGGTTACCAATGGATAGAGAAGTGCATGCCTTTTGTGTGACAGGACTTCCTTATTCTTACGGTCGGAAGTCAGCGATTCTTAATTGGAACGTAAATCTTGCCCAGGGAGTGAAAATTAGACAAATCCATCACACTCGGGCTGCACACCCAGGCAATGCCGGAGCCCACGCCTGTGGCTTCACCTGTTCCCCGGTGGTGCAGCCCTTCACACCAGGTCCAGTCTGTCTTCTTCCCTTGGTGGGGCGCATCCCATCTGTGGCCCTCTGGGGACATTTAGCTGCAGTAAACAGCTTGCACTGAGGAACGATCACCTCTGGCTCATTTTTCCCCCCTCCACAG
Seq C2 exon
TGCACCTGAGTGGAATTACATAGATCCAAGGAGGAAGGAGGAGCTGGACAAGAAAGCAGAAGATGGCGAGTTCTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000003468:ENSRNOT00000004649:7
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.026
Domain overlap (PFAM):
C1:
PF0064816=Peptidase_C2=FE(9.3=100)
A:
NA
C2:
PF0064816=Peptidase_C2=FE(8.3=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]