DreINT0041085 @ danRer10
Intron Retention
Gene
ENSDARG00000010758 | capn12
Description
calpain 12 [Source:ZFIN;Acc:ZDB-GENE-050419-245]
Coordinates
chr18:36708576-36708831:+
Coord C1 exon
chr18:36708576-36708661
Coord A exon
chr18:36708662-36708753
Coord C2 exon
chr18:36708754-36708831
Length
92 bp
Sequences
Splice sites
5' ss Seq
CAAGTGAGA
5' ss Score
5.26
3' ss Seq
TTGTGTTTGTGTGTATGCAGGTG
3' ss Score
9.52
Exon sequences
Seq C1 exon
GTCAAGAAGGCTTCTGAAGAGGTCTTTCTGCTGAGACTGCGTAACCCCTGGGGATTTGTTGAGTACTGCGGACCCTGGAGTGACAA
Seq A exon
GTGAGAAACCCTTCAGCAGCTTATTTTGTTCGCAAATAATTGTTTATTTTTACCTCACAAATAGATTCACATTTGTGTTTGTGTGTATGCAG
Seq C2 exon
GTGTAAAGACTGGGACTTCGTAGACAACACTGAGAAGACGAAACTTGAATTGGCCAAAGTTGAAGATGGAGAATTCTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000010758:ENSDART00000098972:7
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0064816=Peptidase_C2=FE(9.4=100)
A:
NA
C2:
PF0064816=Peptidase_C2=FE(8.7=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GTCAAGAAGGCTTCTGAAGAGGT
R:
TTCTCCATCTTCAACTTTGGCCA
Band lengths:
159-251
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]