GgaINT0081353 @ galGal3
Intron Retention
Gene
ENSGALG00000009382 | CAPN8
Description
NA
Coordinates
chr3:18836323-18837849:+
Coord C1 exon
chr3:18836323-18836408
Coord A exon
chr3:18836409-18837774
Coord C2 exon
chr3:18837775-18837849
Length
1366 bp
Sequences
Splice sites
5' ss Seq
TAAGTAGGT
5' ss Score
4.16
3' ss Seq
CTTTTGTGCTTTGTCTGCAGTGC
3' ss Score
9.27
Exon sequences
Seq C1 exon
GTCTATTACCGAGGACGGCCAGAGAAACTTGTGAGGCTTAGAAATCCCTGGGGTGAAATAGAATGGACTGGAGCGTGGAGTGATAA
Seq A exon
GTAGGTGTTTATATGCCCCTGCCTTTCCCTCTTCTATGTATTTTGGTATCCTTTGAAAATTAAATTGAGATTATGCAGTTTAATCAAATCACAAAGCACATTTAGGAAAGATGGTAAATCCATTGGAATAACACACTATTAATTTGTTAGCAAGGCTGGATATTGATCTGTTCTGCCCAGTGAATGTTCTTCCCTGCCTCAGGCGGAGCTTTCTAATAAGAGAGAACAGGCCATGTTTTAACTGTGGGTAGTCCAATGCAAGCTTTACTCATGTCATTTCTCAACATAACTTTTCTCAGAAGATCCCATTGGTGCTACCAAGACCTTAGCAGGACAGGCAAACCAATTCCATTACTGGAAAACACAGCAAGGCTACACTGCTGTGCCCCTAAGTCAGCTTTGAAGTTTTGGAGTTCTAAATCTGGTCAGTATTTGATTTATACTGGAGAATTCCCCCACTTTCCCCACCCCCCCCCCCCCCCCCCAAAAAAAAAAAAAAAAAAAAGGAGATGAAGACTCAAGTAAGGACCAGAAGTTTGAATAGCTGTCAGAAGCTCTCAGGGCTTGGAATCTCACAGGAATGGCAGAGACAACTAATCACTTATTTTTATTTTCATAAAGGTATGTTGATATATCTTTTGTGAGCACTTTCTTGAGATCTCAGGTTCCTTTCTTGATCACAGTACTGGTGCTGATATAAAAAATACAGTTAAACGTTGTAATTATTCCTATCTTTATCAGAGCTGCTTTACTCAGCCCTAAGATAATGTGTCTCTGGCCCCACATACATATCCTGGTCTTGCTGCAACTGTTTTACCATGGGACAATCCTGCTGAGACAGGTACTGAAGTGCACAGTTGAATGGGAGCAGATGAAGTCAGAATCTGGCTTGCTGCACAGTGACACTGGAGTGGGAATGAAGCGATGCTGCTTTTTGCAGGATTTTGTTCTAATTCCACCTTTTTGCTTTCTTATTTTTGATGACCCCAGCAGCAGAGCTTATGTCATTTCCCTAGGGAGATTACATCCCTACATCCTTATCAGGCATCTCTATAGTTCTTATAATTGTGAAGTTCTTCCCCTGTTTTTGGGCTGCATGCTACTCAATCCAGCCAGCCTGCAATATTGCATTTTCTGCCACCTCGGTTCAAGGTTTATTTGTTGCAGTTTTGGTTGCAGTCTGATTCCAGCCCTGTGTGGTATGTTGCAGTGTGTAGCTCCACTGGAAGGGGAAGGGGCAGAAGATCTAGCTGTTGTAGAAATACATAGATGTTTGTCAGCTGTGACTGAAGACAGAAGCTCACTCTCTGACCTCATTGTGGAATGAAATACAACTGAGCAGGTTGCTTTTGTGCTTTGTCTGCAG
Seq C2 exon
TGCTCCCGAATGGAATTATATTGATCCCAAACAAAAGCAGGCTCTGGATAAGCAAGTAGATGATGGAGAATTTTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000009382:ENSGALT00000015288:7
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.038
Domain overlap (PFAM):
C1:
PF0064816=Peptidase_C2=FE(10.0=100)
A:
NA
C2:
PF0064816=Peptidase_C2=PD(8.9=92.6)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]