DreINT0051630 @ danRer10
Intron Retention
Gene
ENSDARG00000056480 | cpvl
Description
carboxypeptidase, vitellogenic-like [Source:ZFIN;Acc:ZDB-GENE-031219-2]
Coordinates
chr16:20706753-20707416:+
Coord C1 exon
chr16:20706753-20706926
Coord A exon
chr16:20706927-20707233
Coord C2 exon
chr16:20707234-20707416
Length
307 bp
Sequences
Splice sites
5' ss Seq
AGAGTGAGG
5' ss Score
2.6
3' ss Seq
ACTGTGATTGTGTCTCTCAGGTG
3' ss Score
9.77
Exon sequences
Seq C1 exon
GAACCTCCAGATCAGGAGTATTTTTCTTCATTCGTGACTCTACCAGAGGTTCGACGCTCCATCCATGTTGGGAATCTGACCTTCAACGATGGCTCAGATGTGGAGAAACATCTGCTTCAGGATGTCATGAAGTCCATCAAACCCTGGTTGGGCGTCCTGATGGAGAACTATAGA
Seq A exon
GTGAGGACGCCGTTTTGTTTGTTTTTTTAGATTAAATTAAATACCAACATCATATTTCATTAATAATTTGAATTTAATTTAAGTTTTAGCTTACTAGAACACCTAACTATATGGAATAATTGATCAAATAACAAATACCTGAGATGGTGATGCGCCCACGGCCATGGGTGTACATTATTTCATAATAATTTTCTAATAATTGTAAATTTGAATAATATTTAATAATAACAAATGTTCTTTTTTTTACTTTGACTTTCATACAGTAGGTCTTGATTTTGTGCCGTAAAACTGTGATTGTGTCTCTCAG
Seq C2 exon
GTGTTAATCTACAGTGGTCAGCTGGATGTGATCGTTGCGGCCCCTCTTACTGAGCGCTTCTTGCCCACCGTGAGCTGGTCTGGAGCAGACGAGTATAAGACCGCAGAGCGATTCCCCTGGAAGGTTCAGCCCAGCGACACTGAAGTCGCAGGATACGTTCGACAAGTCAGAGAGTTCTTTCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000056480:ENSDART00000078984:11
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0045017=Peptidase_S10=FE(14.1=100)
A:
NA
C2:
PF0045017=Peptidase_S10=FE(14.8=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TCCAGATCAGGAGTATTTTTCTTCA
R:
ACTCTCTGACTTGTCGAACGT
Band lengths:
344-651
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]