DreINT0051881 @ danRer10
Intron Retention
Gene
ENSDARG00000104609 | crebbpa
Description
CREB binding protein a [Source:ZFIN;Acc:ZDB-GENE-050208-439]
Coordinates
chr22:26916080-26918669:+
Coord C1 exon
chr22:26916080-26916168
Coord A exon
chr22:26916169-26918588
Coord C2 exon
chr22:26918589-26918669
Length
2420 bp
Sequences
Splice sites
5' ss Seq
CAGGTGAGA
5' ss Score
9.22
3' ss Seq
CTGTGTTGTAACTTTATTAGATA
3' ss Score
5.62
Exon sequences
Seq C1 exon
TACGAGTTTTCTCCTCAGACGCTGTGCTGTTACGGCAAGCAGCTCTGCACAATACCCCGAGACGGCACTTACTACAGTTATCAGAACAG
Seq A exon
GTGAGATGCTCAAACTGTCAGTCATGCTGTCAGTCACAGCCTTAGGAAGACGTGTGGTTTGGCACAAAGCGATCACTGTATCTGAGATTGGCCAGATCAAACATTGGCATTAACATGCTAGCACAGTTGACTCTCAGCCTGTTCATACGTGTTTGCTAAGCCTGTTCGCTCCTTCACAGCCCCTTCTTCCCTGCTTTTTCTCTTTCTTTATGGTTACCCTGCTTGAAGTCTCCAGCCAGTCCTCATTTATTGGCAGTTGTGATATTTGCACTGGCACAATTATTAGTTTTTTTTTTTTTTTTTTTAACACTGTGAATTGGCTGATTACTCATGACAGGCTCCCTTGCGGCCCCTGCAGTACACACTGGGTCATTACAAGATTTAAAAATAAGCTGATTGGCACATATACACACTCAAATGCTCACATCCACTGCCCAATTTATGAGTTTAGTCGACTTTTATGTTATATGCATATTAAAATTATTTTCTGCTTAGTTTATATTCATAAGAATGTATGTATAATGACAATGGTCAAATAGCATGACATTTAGGAAATTTTCATATGAATAGTTAAGATGCAAAAACTTCTAAATGCAGTCTGAAATATTCTCCTAAAATGAGCATTTTTCTCAACCTGCTACGTTTATGTCCAGTTATTTAACTTTAAAGGCAATGAAAAGAACTTATTCATCAGTATAACAGCCAAATTACTGAGCCTACCCACAAGATTCAGAGAAAAATGCTCATTTGATAAAAGAAAATATCAAATGGCATTAAGAGCATTTTTCATCTAAACTCTGACATTTTAAACATTTATTCATCTTCCTGACATTTTAAATCCTTATGAAATGATTCATTTTCAAATTAAGATTTTTCTTAATAAAAACTAAAAGACATCTGTCCCTCTATTTAAAGGCAATGCATCAAAAAGAGATTAAAAAACAGCATATCAAATATGCATGGTTGTTTAATTTGATTTAATTTGGACTTCCTTTTTCATATATTAACATTGATCAGCAAAGTTAATTGCATTTAAATCATGTGTGATTGACATTTAAGAACCAATGAGGTTTAATCTCACATAGGGTTTGGTGTGATTTGGGTCTTCTGTGATACTGTTGTCAAATTGATGCCTGGGCCGATACTTAAAAAATAGAGCCTCAAAACGGTGTTGGTGCTACCATTATGCAATGGTATTTTATTGAAATAAATATTTAAATTGAACAATACTGTTTAAAATATTTATTTCAAATGAGCTGAAACACAATTCTTGTTGATTTAAAAAAAAAATTGTTTTATGTTCAATCCACGCAATTTTAAGTTGAATAATTAATCGATTTGTGTTGAAACACAATGAAAGCCTGCATTTTTACAATAAATATAATAATCATTTAAAGTATACATAAATATAAAAAGTTCAAGAAATAAAAAACAACAAGAAGTAAATAAAACATTAAAATGTCAAATGAACCTAATCCTCCTTGACTTACTACAACAATTTAATGCTTACAGAACTAGTGAAGCAGTACGTGTTCTTGATCTGATATAAACCAGCTTTTGCAGAAATATGACCTTATGTGTCCCATTAGCTGATGTCCATTATTACCTTTACACGTGCACTTGTCAACTTATAGCATCTAGGGTTATTGCTAGTCATTTATGATGATTATTTGTCAATGAATCTCTAGCCTAAATCTGTTCACCATAAATTGAATGTGTGTCTTTGAAAGATTTGTATTAAACAGTTTCTTTCATTTCAGTTTAATACTGCCTCATAATTTTTTGATAGTGGGACAGATTTGAGCATTGAAATTAAGGAAAATATATATTTCAGATTAAACTAAAATATATTAATTTTTGCTCCACGGATCAGCAAAGTTGTTTAAAACAAGTAAATGATGACTTAAGGCAAAATTATTAGCCATGATGTGAAGTTTAACAGCAATTTTTCCACAGTATTTGCTATTATATATTTCTTCTGGATAAATTTGGATTTTGTTAAAGTTGATGGGAATTAAAAGTATAAATTTTGTAAACAAAAATAAATAATAATAATAAAAATAATTAATATTATTATTATTATTTAAGGTCAATAATATTAGCCGCCATACGTGTTTTTTCCCATTGATTACAGAAGAAACCACTGTTGTCCAAAGACTTGCCTATTACCCTAACTTGCCTAGTTACCCTAATTATTACTGGTATCTTGCAAAATACTTTAGACAAAGACAAAAAAAAAATGTTTTTAGAAATTAGTTGTTAAAACTTTTATATTAAGAAATTTGTTGGAAAAAAAAGAGAAAATTTGAAAGAGTTTTAATAATTTTGCCTGCAAGTATATATAATCACAATTTTGTTGCATGTGTGTCTGTATTTTTAATTTAGATATTTATGAATCATCTGTGTTGTAACTTTATTAG
Seq C2 exon
ATATCATTTCTGTGAGAAATGCTTCAATGAGATCCAGGGAGACAGCGTGACGCTAGGAGATGATCCTGCTCAGCCTCAGAC
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000104609:ENSDART00000158756:19
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.071
Domain overlap (PFAM):
C1:
PF060018=DUF902=PD(66.7=93.3)
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]