HsaINT0041351 @ hg19
Intron Retention
Gene
ENSG00000005339 | CREBBP
Description
CREB binding protein [Source:HGNC Symbol;Acc:2348]
Coordinates
chr16:3801727-3807377:-
Coord C1 exon
chr16:3807289-3807377
Coord A exon
chr16:3801808-3807288
Coord C2 exon
chr16:3801727-3801807
Length
5481 bp
Sequences
Splice sites
5' ss Seq
TAGGTAAGC
5' ss Score
8.89
3' ss Seq
TATGGCCTTCTTGCTGACAGGTA
3' ss Score
9.35
Exon sequences
Seq C1 exon
TATGAGTTTTCCCCACAGACTTTGTGCTGCTATGGGAAGCAGCTGTGTACCATTCCTCGCGATGCTGCCTACTACAGCTATCAGAATAG
Seq A exon
GTAAGCGTCAAGCAGCATCCTGCATTATGTCTTAGGGCAAGGCACGTTCATCTGGTTATAGTCTGTGTACATTATTTCTTTCCTGAAGTTCCAATAAAAAGTGGCCCAATTTCAGGCCGGGTGTGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCTGAGGTGGGAGAATCACTTGAGCCCAGGAGTTATGTTATCAGCCTTGGCGACATAGAGAAACCCCCATCTCTATTTGAAAAGAAAAAAAAAGAGAAAAAGTGGCTCGGTTTCAGTGTCTTGTTAGTCACTTAGGCCCATGGCCTCTTAGTTAGTTATAAAGCGTACTTTTACAGTGTAAAAACTGTAACCTCAGAGCCAAGTCTTGCCGTACTACTTGGATTAGGTACGTTATTTCTTCAGCCCTGCCCGTTCTAAAACGCAGCCCTAGAAGCAAGCGTCTGAAGTTGAGAGTAACTCTGATAAAGGTTGACATGCCTTTTTCAAGATGTTCATAGAGTAGAAAATGTGGATTTTACTATTCTACCTGCAAATATTTGCCTGGTAATTTGGCCTGATCAGTCTCATGGAAAGACTTGCATGAGTGCTGCTTCCTATAAGGCAGAGGAAAAGGGTCCATGATCTTTATTTTTAAATTTTACACTAGCAGCACGATACAAAATGAGATCTGGTGTTTTAATTGAGTTCAAGAATGTGATTCTGTTGCCTCCTATTATAAGATGGCCATTTCAGGGTTTTGTGAGTGGTGGATCTGCTTAAGAAATACTTGCCATTCTTTTGGAATATGAAGATGGCTAAAGAATAGATCTCCTGTCTTAAAATAGGTAGAGAGTGAGAATAGTATTTTTTGTTGTGGTTTCCCACAAAATACAGCTTGCGTAGTTTTGGAGTTGTTTGAGAAGTCAGCTTATCTGTACCGCAGCGTGTAAGTGTCCATGTGCCGCTGCAGTGTGAGCGCACCATGCGTGGAGGCACAGGTCAGGAATCTTGCTCAAACTGTGACGTTGCCTCTATTTTATGAGCCAGCAGCTGGATTCTCTGTGGCCAAGATAGAGGTTTGTGCCTGTTCTTTGTCTTTAGGTTCAAATAATAAGCGTCAACAGTGGGGTTTGGCGTTTTTTATTATTTTACTCTCATTTGGTCAGAGTAATTATGTCCTATACTTCAAAGAAGACAGAAGGCTTTTTGTTATTTGTTCACAGGCCTGAAAATTTTGGAGTTTTATGGTTATGTGTTTTAATTCTTCTATGTTTTTTTTAAAAATCCATATTCAAGATAAGTAATAACTCCCATCAAAATCCTATTTTTAAAAAAAATCCTTTTGACACAAAAATGTCTCAAAAAAGGTTCCTAAGCCTTTTCTATTAGGAATAAGCCTGGCCTGCTTATTCCTAATACTGTTCAGTGTAGTGAAACACTGGTGCAAGGGGGAAGGACAGACCCTAAACTGCATCCCTGCTAGAAGTGCAGCGTGTGCAATTGTCCTGCTGAAAATAGTTTAACATTCAGAGTCTGATTTCCATCTCAACTTCCCCTTTATCAATAGAAACATTTTATGACCAAGTTTAAAATGATACCATAGCCCCTTCCTAATGGGATCTCTCCCATAGTGACTTGCTGCTCTTTGGGAAGTTCTGGCCACTCCTTTTATGCTTTTAGCCCCATGACCTTCAGCAGACCCCATGATGTATTAATGTATTAAGCTTAGCCTTGTCTGTGATACAGACAATAGCGTCTTCCCTCGCAGCCTCATTTTGTCAGGTCCTCAATGATGAAATAATGAATAGGAATGCACTTTAAAAACCATTTGTGCCAAGCAAAATAAAGTTAATGATATCTTCAGAGAAAGGTTAATATTAACTACACCCAGAAAAATGCCACCCCTGCTACGTTGCCCAACACAGTTTTGGTCTAGAAGGAAGGTAGATTGTTTACCACTGTCTCTAAAGTGTTGTGGGGCCTGTTCCTGGGTCCGTTGGTACCCTGCCTTTGCTGATTTGCACAGATTTTGGTCTTTTACATTGAGAGCAATTAAAGTTAAATGGAATTGGTAGGACCAAAGAGTCATTGATGGCATATGAAGTCATTGATGGCATATAAAGTCATTGATGGCATGAAAGTTCTGAAACGTCTAATTTTATTTCTGTATAGAACTTCATTTTTACTAAACAAAAGTAATGTATTTTTAAGAGTGGAAATGCAAATAAAGGAGTTCCATTTTATTAGTGATAATTTTTAAAGCGTAGGCGTAGCGTTCCTCAGACGATCACAGGCATGCTCTCTAGAACAGTGTATCTGACTGAGTAGGTTAGCATATTATCATCCTGAGAAAGCAGTGGCCTGATTCTGTAACAAATACTTTAACTGCTTATGTTTTTATTTTCAACTTTGACTATTTATGAACACTGCAGTGTTCTTATGAATAATTGTCTTGGCACTTGTAGTCCTAAACTGGGCACTTAGAACAATAAAAAATCCTACAGATCATTTAAACAAGTGAAACCCTAATATATAAGTGAGCGTATGATTACATTTTCACTTGTTTTCATACTTTGCAAATTTGAAAGTAACTCATGTTGGAAAAACTGTTCTTTAGCTTTCCCAGTTAGTATCTGTAGATAATATAAGTATTATCTATAGATATCCCAGTGATATGTACTGATATGGTACTTAAAACAATCTGCATTTGAAAACTTAGTCCATATATTAAATTACCCTTACAGATAAACTATGCAGTTCCATGGTACTATAGCAACCCTGAAATGCATCATCACTGGATTATGTGAAGTATTTCTCCTTTGCAATTCCATATTCATCAAGCTGCTTCCTTCACACCAGGCAAAATGTCATCTAGGCGCTTAAGTTGAAAAGTGAATTTCTAAATCTTTATGTGTTTCCAGGGAGAATAAAGTGTGGACTAGGTAAGAAGGTAGGGGCAGTCTGGCAATAACATCTATCACTCATAGACTGCCAGGGTTGCTTTAGCTGATTTTACTAGTTGGGGGTGACTGTTCCCTTTTCTGTGTGCTGTCTTCCTCTCTCAGAACAGTAATAAAGTGAAGCCACGGGCCCCTCTTCCTCCCCTTCTTAAACACGAACAGGCTAAATTGTCCATTTCTCCAGCAGTTTTGAGGCAGACAAGGAGTCTGTTGATAATGCTTTGCCTCCCCGGTTCTGATCCTGGGATTTTCCAGGGTGGGAGTCAGTCATACAGGAAGAGCCTCAGTTTCCCAGCCACTGCATGGGCTGCCATTCCACCACCAGTGCCTCCCTCAGTGTCACTTTCCTCGGTGGGGAAGGATGGGTTTATGGTTCTTGTTTCCTGGATGTTGCTGGGCTTGCTGTCCTTAAATAAAAGCAAAGGATTTCTCCAGGATTTTAAAACCATTTAGACTCACCTGTGATTACGGTGGGAGTTTCATTTCAGAATGTCTTGAACGGTCCCTTCTAGTTGGCCATAGTTCTGCGTGTTTGATTGTATCATGAATGGGGCACTCAATTAGGAGTTTTACTTATAAAAGGGAAGTATTGGGGATTGAGGGAATGTCTTTTTTGTGTATTGTTTTGGTTGCCACTGAATTGGTTTATAGTTTCTGTACTTTAATTCCTTCTTGCCAGTGATGACCATACCCTCCTGCACACGGAAGTTCTTCTTCATACCGGATTTTAGGATATTTACAAAATAGTGAATGGCCAGAATATTGCTATAGTTCATTCAGGGAAAAAAAAAATACATATTTAAAGAAAAACATTAATCTGCCTCTTGCCTGTCAGAGTGTTAAATCCTGACATAATTTATTAATTGAGTTAGTGCCAAATAAATTAGTCCCAGCAAGAAACCTTCATTAATCTAGTGAATCTGTCATGTTCCTCATCAACCAAACACAAAAAATTGGCTCATCTTGAGATGTGCATGCACTGAAGTTGTATGCTTTAAAATTTGCTGTATGTGTGTGGTTAGTGAAATACAACAGACAAAATGCTCAATGTATTGAATTAAGATTAGATTTGGGACTTGTGGGGGACCTGTCCTAGTGGTAGTGAACTGGCCACACGGTGGCCCACGCCTCAGTCTTCTGTAGCCGTGTGAGTGCGCAAGTGAGTGAGACTGCAGCTGCCGCGTCCCATTCTGCACTTGGTGGTTCAGCCTGGCGCTCGAGTCCTGTCGCACTGTTTTTAATACTAATCCTTCCTGGCATCTTGTAGACATAGTTTTGAGCACTAAACCGCATTCGTGCTGCCGTCGCTACCTGACACTCATTCTTCTCGCTTGTGTGATCCACCTCCACCCGCTTGTTTATTCTTACGGTATTCTTGTGTACTCATCTTGTTTTATGCAGCATCAGCCTGCATTTCTGTTGATTTCTCATTTATGTCCTTTCCAAACATTTAGTAGTTTTTATTTTAATTGTTTGTATTTGATAGCTTGAGCCCAGGCTCTATATTGTCTTACAAGAAATTGGGGTGATGGATAATTTCTCAAATGCAGATTGTTCTTTAAAGATTAACTCTAAATTCACTTAACTTGGATTGCCCCCAAGTCAGAACAGTCATTCGCTAAGTCTTTCAGATTGATGAATGATTGGTCCCAGTACCAAAAATGTCAAATCAAAGCTTAGAATTGAATTTTCAAAGATTGTTCATGGATTTACATATATTGTATTTCTTATACAATATATCACATTTCTTACTCTGTATATTCATATTGATAAATGGGTGGAAAGTCTTTGACCCTGACTGCATTTATGTTAAATGTTTGTCTAGAATATGGATTTGGTTTCATTTGTATTGTAACACAATTAACTGAATGATTAACATGAAAAAAAAAAAAACAGGAAAAAATTAAAATCAGTTCTGGGTGCTCAGCATTTTCATACATTTAAAGATCTGGCTTAATACCGGAAATAAAATCTCTGAATTGCTGTCAAGCATAAATTTTCCATTTTGAAAAATAAAGCTATTTCAGTTTAAATTGCTTTTTTAAGGCCTTTTGTCAGACTGTTTTGTTCAAGTAAATTTTTCCATCTCAAACCCTGGAGTTATATTTGACTTTCTCTGAGTAAGAACAAAATTCAGATTCCTAAATTTGGGCTCCATGCAATTCTAGTATTAACAACTCCTTGAAAACATTTGCCTCTTGGAGCCGGACCGAGCCTGTCGTTGTTAGTGATGATGGCCTGTGATGTGTGCAATGAGACCGAATGCTAATCAATGCTTTGCCTTGGCTTTCTGCTCTGTGTTGTCTTGGTGTCTGCGTCTTACCTCTGTGTCTGTGCTATTTGTTCCCTTCCCTGTTCTCTAATCCTGCCTTTCCCCACCTGCCCCCTGTTCCTTTCATTGTCCTCACTGACCCATCAATCAACCAACAACGCCCCCCCTTCGTCGTGGTGCTCTGCCCTGCTCTGATTGGTGGCTTCGTTGCTTGGGTGGCTGTGTGTTATGATGGACCAGTTCACCCAAGTATGGCCTTCTTGCTGACAG
Seq C2 exon
GTATCATTTCTGTGAGAAGTGTTTCACAGAGATCCAGGGCGAGAATGTGACCCTGGGTGACGACCCTTCACAGCCCCAGAC
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000005339-CREBBP:NM_004380:19
Average complexity
IR-S
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.357
Domain overlap (PFAM):
C1:
PF060018=DUF902=PD(66.7=93.3)
A:
NA
C2:
NO
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
- Pre-implantation embryo development
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)