GgaINT0013498 @ galGal4
Intron Retention
Gene
ENSGALG00000007762 | CREBBP
Description
CREB binding protein [Source:HGNC Symbol;Acc:HGNC:2348]
Coordinates
chr14:12513130-12518503:-
Coord C1 exon
chr14:12518415-12518503
Coord A exon
chr14:12513211-12518414
Coord C2 exon
chr14:12513130-12513210
Length
5204 bp
Sequences
Splice sites
5' ss Seq
TAGGTAAGT
5' ss Score
9.66
3' ss Seq
TATGGCCTTCTTGCTGACAGGTA
3' ss Score
9.35
Exon sequences
Seq C1 exon
TATGAGTTTTCTCCACAGACCTTGTGCTGCTATGGCAAGCAGCTGTGTACTATCCCTCGTGATGCTGCCTATTACAGCTACCAGAATAG
Seq A exon
GTAAGTCCTTGGCTGCTTTTCTCGTTTTTCTTTTTTCCTTTTCTTTTGCCTTATTCAGGAAAGCAGTATTGTTTGTGTTGTCTGCAAATGTGGAGGAGGATTATTAACCTTCTCTTTCCTTTGTCTGCTAAGTCAGGAAAAAGTTGGTTGTTTACCCTTGCATGCTGTCCTTTTGCAGGTGACCCTCTAGTTTGCTGTACTGCAGGTAGATAGACACGATGCTTAGCTGCTTGCTGTTGGCCAGGCTGTGCTGCTGAAATGCAAGTGCTCCGTGTTTTCCTCAATACCAATAGCAGGGCACACTGCAGGGAGAAAGGTAGAGCTGCTGAAAGGGACTGAGGGAGTTACATTGCCTTGGTCTGCAGAATTATAAAAACATGCAGCTTTGTTTTTTAATTACCGTCAGAATTTAGAAAGCAAATGGTACAGTAATAAAGTTTAGCAGTCGCTCTCTCATCTTCTCAGCACCTAATTCTTTTTAAAGTAGCTTGGGCTTCCTGTTTAAAAACTTCTGACTCCTTGAAGATGTCAGAAAATAATGCTCGATGCTGAATCTTTTTCTTGATTACTGTTAGGATTTGATGTTAGCATGATTATTAACCAGTAGCATTGTAATAGTTTCCATTTGATACATAATCAATGACGTTATACTGAATAACAAAGCAAACTTAGACTGTGGCTTTGTTCTCACTTTTGGCTTCTTTGATTTATTTTTCCCCCCCAAAGAATCAAAAAATGTCAAACCATAGATGTGCTGTGGCACCAACCTCCATATCCCTGTTTAAAACAAAGTTACAGGTTTCTTTCTGTGGGTTTGACAGTCCACAAGCCATGCCAGCTTTGAAGTGTGCAGCAGGCTGTTGTCTGAGCAAAGTTATGGGGTGAATCCAGGCAGTCAGTGCTTGCATTTAGTCTCCCTGAAGGCCGTCCCTACGTCACCAACTGCTTTGTAAGATGGTGTAAGACTGTTGTGTACCACTGAGCTGGAGCAGCACAAATGTAGGAGATGAGAAGGTATTGCTTTGCGCTGTGTGTTAGGATTGAGGTGGATTGCATTGTTACAGAGAAAGGCAGATAGTATTGTTAGGGAGGAACGTTGATTCACAAGCTCCCATAAAAGGTTATACACAGCTGCTCTGAACTCTCAAAAAAGTCAGTCTGAAGAGAAATAAATCAGTAAAATGCATTTAAATGGATAGTACTTCCGTGGCCCCTGTGGTCCTTAAATACTGGTGCTTTGTGATAGGATTTAAAATATTTGTCATATTCTACATCCAGATAGCGTGGTACATAAAAAGAATAGCAACTTCAAAAATAATTGGAGGAGTCATTTCTCTTTCAGACTGTTTGGGTGTTAAATCACCCAGGTTGCTCAGTAGAAGGCTGCGTTGGTGCTGGTGTGAAGCACAGGGTTGGTGCTGCAGTGGGTTCCTTGGGGCTCAGTGATGCACCATGGCAGCTTCCTACCTCTTAGGGATGAGGCAGTCCCCTCACGTAAGGTTTAGTATTAAAGGGTAGTGGTAGCAGGTGAGAAAGGGGCACTGGGAAAGGGCCGTTCACCCAGGTGTCAGTGGGCAGTAACAGAGATGAAACAGAGATAGGTGTATTGAGAAAGAGCAGGGAGCTTTTGGATTTGGGCTTTTCTGGTTGGTTTGTTTTGAGGTTTGTATTTCAGGCTGCTAAAATCAAGAGAGCAATCTTTGTGTAAGTTTGTTTGTTTTAACAAGGTACTTCTGAAGCTCAGTCGCTGTATTTTGAAGTGTGCATTTGGCTGATCGGATCATAGAGACCCTTTATTGGTCAGCTCTATCACTCCAAAACAGTCAGACTGTTTCCTACAACAATGATATTCACATCTTAATTTTTTCTTAACAAATTACTGGAAAAATTCTGTCATTCCAGCAAAACTGTCATTGATTGAACGTTTCTGACCTCTTCAGCATAGAGAACGGACAGCACTGGGTTTACTGGAAGCCCGGGGTATTTACAACTAAGAATAATGAGGCACTGTTCAATAACTGAACTCTGCCACTGCAATTCAGTGATTAAAAATTAATCAGTTAGAATAGGACCGTTTGGCTTCCACAAATAACACAGAAGCTCGGGTTAGAGCAAGTGTGGAGAAAACACACTTCTTCTATGGGTATCCATTTGAAAGAAAAGCAATTGGCATTTCAGGTGAGTGCCAGCATCCGATTGCTAGGCTAGAAATTCCTTCAAGTACACTTCAGTTGCAGTTGGAAATGGGTGTGCTGACACAGACTGAGCCTTCTCAGGACTTTGATAACGAGCCATAATGTGACTTGTCTCTGATAGACGGGAATCAGTCACCTGAACAGTCTGCATTTGAAAAGCTCTCCATTTTTCATGCAGTGAGCACCTTCCTTGAATTATCTGCCTGTTACAGCCAGGATGTCCAATGCTTCCCAAAGTGTTGGGTGAATATTTGTGGCAGCATGCAAAAAAAAACCCCACAAATTATGAGCGGGTCTCCATTTCTGCGGGTCCATATTCATAACAACTTACAGTTACTATTTCACCTCGGTTGTTTTATGGACCAGCGTTCATGATCTTCAGGTGATTCATTTTCACTGTACTTCAGTTTTCCTTTCTTCATCTTAATCCCACGTGTGAAGGTTGGACTCTTGGTAGCGTTAGGCCCGGCTCTGCAGCACGGAGCTGTGTGAGCTGAGGTGGTCGTGTCGGTTGCTCTGAATGTGAGTGGTAATGAACTACGTCTGGGATTGCTTAAATTGAACCAGGTGTGAGTGGAAGCCGTGCCTGTGGGCTCTTCAGGTTACACACCCCTTCGTTTGGGTCATCCTGTGTTTCAGTGCTTCCCCGTTGGACTCCTAAAATGATCAACCTTGGCAGTTAGCGTTTGCGAGTTCGTTGGGGTTTTTTGGTGGTTTTTTAATTAAAGAAAATTGCATAGAACGACACAGTAAGAAAAAAGACTGGATGGGCAGTGTGTAAAAAGCAGATAAGCTCTGCCCCTGTTGTGGCTCTGGAAACAGGCTGCGAGGTGCTGTGGGCTCAGCACCAGGGAGGCGCGGTGTCACCGCCCGCTCTGCCCTAGGATTGCTCTGTGCTCGTCGTGAAGCATTTATCACTCCCAAAGACTACAAATGAACAGAATCAGTCTTTTTTTTTTTTTTTTTTTCTCCTGGCCTCGTTCTGTTGCATTAGCGGCTCCAAAAGCCTTGGTTTTGCTTGAGAGGGTGATGTGTTTAATCCCGGCTGAGCTGACCTGCAGGAGACGAGGCACGGGCAGTTAGCGTGCGGTTGGCTGCGAGCAGGGAGCGGACATCTTAGCTCACGTGCTTGCTATCCAAACTGCAGCTGCCCTGCTGGTAAGGTTATTACACGGTTAGGTCAGTATGGGCTATGTTAAGGAGAAAAAAACCCACCCCTTCTTCCTCTTTGTGTCACTGCACGCCCAGCCCCGTGTGAAGGAGCTCTGAGCGTGCTGCTGCGTTCAGTGGTTCCTGGAGCCGGAGCCAGCTGGCAGGGCCTGCGGGGCTTGGAAGGCTCCTCCGAGCCGTGCTGCCATAACACGGCCCTGGCTGCGGCGCCCCTCAGAACTCCTTCCCTCCATGTGCTGGGTGCTGCCAAAGGGCCGGGTCCTGCCTGGGTTGTGCTTTACGGCACATGGCGGTGCTGTCACGGCCTGCCTCTGTCACAGGAGGAAATTCCGGCCTGCGCGTTGCAGTAAAGGCCACTCAGTGGCGTTATTTGGCTCCTGGGAAGCGCAGTCCTGGGGTCTGTCCCCTGGCTCACAGCTTACACAGGATGTGTTGTAAGGGACAAAGCTGCCGTGCTGACCTCCACCCCTTCGGTTGTTGGTTCCTTGTGACACCGGGTCTCGTTCGATGCCTCTGATGCTCACCGTTCGTACAGTTGTAGTGTTTGAGTACTAAAACTGCATTTACTGTGCTGCCATTGCTGCTTATACTCTCTCACTCTTGAACCTCCATAAAGCTCCCTTATTTTGATGATCCTTCGTGGCCTTCCTGCATTTTACAGCTGTGGCCTCTCTTTGTTACCTTTGTTCATGTGTGAATTCATATCCTTTCCAAACATTTAGCCTCTCGTTTTTAATGACCCAGACAACGTTGGTTCCAGTTCATGTGAAGCAAAACAAAACGAACGATTAAAAAAAGAAAGAAAGAAAAAAAAATATATGTGAAACGTAGATATTTGTTTTTCAAATGCAGATTGTATTGTTGTGGAGCTGCATTCCGACCTACTCAGCTCGGTTTGTTAACCCATTGGTTTGCTGAGTGTAGCAGGATTGGCTCTTGGTCTGGGGACCAAAAATTCTCTCCAGTCTCATATCTGATTTGTGAAGCTTAATGGCACGTCGTTAACGTACCCAGTAAATATATTGTATGTATGTACAATATTCAGTGTTGTTCACATATATACATATATCGTATTTACGTAGATAAATGGCTGGAAACTCTGACCCATAATTGCATTTCTGTTAAATGTTTGTCTAGAGTATGGATTTGGTTTCATTTATATTAAATAATAAAAGCTGAGCAATTGGTCACATTTATTCTTACAGTCAAATAACTTTTGAATTGAATATTTTAATAGCTATTTTTTTTCCAATACCAAGTGTTTCTGCTTTTATGGTTTTTACTGACAACCAGCAAATGCTTTCAGCATATTTCCTAATGGCTTAAACCTGTAAAAGTGTGTTCCCAAGGCTTCCTGACAGGCTGCTTTTTTTAACCAAAGGAAACCCCATCAGTCTCAAGCCTGCAATCAAAGCGTTTTTTTCCCTAAGCGATGCAGATCAAATCCAAATTGTTAAATTTGAGGCCTCCGTAACGTAGCGCTTGGTAGCTGCTGCATTAATCCTGCCCAAATTTGGAATCTGACCCTCCACTCTGTTAGTAATGATGGCCGAAATGTATAAAATGAGACCGAATGCTAATCTGTGCTTTGCCTTGGCTTTCTGCTCTGTGTTGTCTTGGTGTTTGCGTCTTACCTCTTACGTCTGTGCTGTTTGTTCCCTCCCCTGTTCTCTAACCCTGCCGTCCCCTGTTCCTCCTCATTGTGCACACTGACCCACCAATCAACCAACAAACCCCCCTCGGCGTGCGATCTGCCCTGCTCTGGTTGCTGCCTCCGTGCTCGGGTGGCTGTGTGTTGGGCTGGACCAGTTCACCCAAATATGGCCTTCTTGCTGACAG
Seq C2 exon
GTATCACTTCTGTGAGAAGTGTTTCACTGAAATCCAGGGGGAGAATGTCACCCTGGGTGATGACCCTTCCCAGCCTCAAAC
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000007762:ENSGALT00000039566:20
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.333
Domain overlap (PFAM):
C1:
PF060018=DUF902=PD(66.7=93.3)
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]