DreINT0057158 @ danRer10
Intron Retention
Gene
ENSDARG00000078058 | dip2a
Description
DIP2 disco-interacting protein 2 homolog A [Source:ZFIN;Acc:ZDB-GENE-091204-2]
Coordinates
chr9:608357-609015:-
Coord C1 exon
chr9:608896-609015
Coord A exon
chr9:608472-608895
Coord C2 exon
chr9:608357-608471
Length
424 bp
Sequences
Splice sites
5' ss Seq
CCTGTGAGT
5' ss Score
7.21
3' ss Seq
TCGTGTTCATGCACACACAGGGT
3' ss Score
4.64
Exon sequences
Seq C1 exon
CACGTGTTGCCGTGGTGAAGTCCAGGGACATGCACTGGTCACTTTTAGCCCAGCGGGATCAGAGAGACATCAGTCTGAGCTCTCTACGCATGCTCATTGTAGCAGACGGAGCCAATCCCT
Seq A exon
GTGAGTACACACACACACTTACATACACACAAACATACTGACACATATGCACACACACATACATAAATGCACTCACACAAACGCACAAACACAAGAGCATACATTTACATACACACAAATATACTGACACATACGCACACGCACATGCACGCATACACTTACACACACAAGCACAGTGATACATATGTGCACACATACTTACACACCCAAACTCCAACTCTGATTCTCTTCTCGCCGTTTTCCTCATGGAGGCCAAAAAAAGTCCCCATAAAATCAACATTTTTTGGTGTTGCTATATTTTTGGGGACATTTAGTCCTCGTAATGTATTAAATACAAGCTACATACACACACTCATACTCCTGTGATTCCGGATTGAATGTACTGACAGTGGTCTTCACTGTGATCGTGTTCATGCACACACAG
Seq C2 exon
GGTCCATTTCGTCGTGCGATGCCTTCCTGAATGTGTTTCAGTCGCGCGGGCTGCGTCCTGAGGTCATCTGTCCGTGTGCCAGCTCCTCTGAGGCCCTGACCGTCGCCATCCGCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000078058:ENSDART00000115030:16
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.077
Domain overlap (PFAM):
C1:
PF0050123=AMP-binding=FE(8.4=100)
A:
NA
C2:
PF0050123=AMP-binding=FE(8.0=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ACGTGTTGCCGTGGTGAAG
R:
GGATGGCGACGGTCAGGG
Band lengths:
230-654
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]