GgaINT0051021 @ galGal3
Intron Retention
Gene
ENSGALG00000006228 | DIP2A
Description
NA
Coordinates
chr7:6930730-6932387:-
Coord C1 exon
chr7:6932268-6932387
Coord A exon
chr7:6930845-6932267
Coord C2 exon
chr7:6930730-6930844
Length
1423 bp
Sequences
Splice sites
5' ss Seq
CATGTGAGT
5' ss Score
7.83
3' ss Seq
GTTGTTACTGTTCTTTTTAGGGT
3' ss Score
9.48
Exon sequences
Seq C1 exon
CCCGTGTTGCTGTAGTAAAATCACGTGATATGCACTGGTCACTTTTGGCTCAGAGGGATCAGAGAGATGTCAGTCTAAGCTCCTTACGAATGTTAATAGTGGCAGATGGAGCTAATCCAT
Seq A exon
GTGAGTATGGATGTATTTTCTGAGCTGTCAGTTCAAGGTGAACTGAAACACACATAAGTCACGGAAGTCTGGACCTGTGCTATTGGAGCTCAGCAGTTAGTCTTCAGCAAAAGGGACAGCAGCAGTCTTTCTAAGGGTAGTGGAGAGAAACTTCAATAGGAAACATTTTATGACTTAATATATAAACAATTGTTGGCAATGCAGTTTTTTGGAACAGTCTTTTTAAAGTAAATCATAATGCCAGTTTCAAAGTAGATGTCCATGTGGTGCAGTAGATAAAATGTATGATTTGGAATATGTGTCTGATTTCTGTACATTACCCCGGAGTTCATCTCAATCATGCAAGGACATAAAAATTGAAGCAGTCACAGCCTTAACTCAAATGAATAATACATATTATTAACTAGTGTAATTGGTAGAGTCCTACCTTTTTCTGTAAATAATACAGTGGTGATGGACAGCAAATTGAGAAAAAAAAAAGTAGCTAGGAGGGTTTGTTTGCTTTCTTCTTTTCATCCTGCAATTAAGGATATAACTTTGGGGCTTAGTTTTGCTTGTACCTTAGAAAATCGATGGTATTTCAGGTTTGCTGGAGATTAGTTACATGATGAGAGATTAGAACATGCGTTGGCAGAATATAAAACTTGAACTGGTCTTGCTAGGGTGATTATTGTTGTAGGCAGCTTTTCAGAGCTGATGCTTAGAAGGTATTACACAGTTAATTCTGTAGTAAAATGCATACTATTTGTATGCTGGTGGTGTCACTGCTTTTTCATTGCTGTTTGCCCATTTTAGCTGTATGTATCTTTGTAAATGAATTTTTCACCAGTGTTGTACTGTAATATGAATTTATATGAAATTACCTTATACCCAGGATATAGCATGAGAAGTGAAGTTTGCCTTGTCTTATGTACTGTGATTGCAGATCTGTAAAGTACAAAGCTGTAGGACATGCAGTATCCCCATACATTTTGAGCTAATGGCAAGGTAGAGTTCTGAACAGAAGTGAAGATCTCTCAGAAGCATTTGATTTTATTTTTAAATGCTGTGGTTCTCTGGTCTCAATAAGAAACACTCATGTAAGAACTGTAGAACTGTCAGGTACAGTTACCCATAATGATAAAATAATCACTGCATCACTGTAGGACTTTCAGTGATCATGTTACGAAGCACTACCAGAGAAAGGGTATGCAATTGTGAATTTCATTCAGTGAATTAGTTGTTAGCCATTATTTTGTTCTTCAAATCTAGAATCTAATAGTAGGGAAGGATGTCCTTTAGTTTGAAAGTATGTCGTTTTTGTGCAGGAATGCATTCGTATCTATACAGGTGAGGTTAGAGTAAGAGTAGACATTGGACCTCTGCACATCAAGCTTTCCTGCACTTGACAAAATGTTTCCAATGTTGTTACTGTTCTTTTTAG
Seq C2 exon
GGTCAATATCTTCATGTGATGCCTTCCTGAATGTATTTCAGTCCAGAGGTTTGAGACCTGAGGTAATCTGCCCCTGTGCTAGTTCCTCAGAGGCACTCACTGTTGCTATTCGCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000006228:ENSGALT00000010067:16
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.051
Domain overlap (PFAM):
C1:
PF0050123=AMP-binding=FE(10.2=100)
A:
NA
C2:
PF0050123=AMP-binding=FE(8.0=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CCGTGTTGCTGTAGTAAAATCACG
R:
CGAATAGCAACAGTGAGTGCCT
Band lengths:
231-1654
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]