HsaINT0048081 @ hg19
Intron Retention
Gene
ENSG00000160305 | DIP2A
Description
DIP2 disco-interacting protein 2 homolog A (Drosophila) [Source:HGNC Symbol;Acc:17217]
Coordinates
chr21:47958396-47959904:+
Coord C1 exon
chr21:47958396-47958515
Coord A exon
chr21:47958516-47959789
Coord C2 exon
chr21:47959790-47959904
Length
1274 bp
Sequences
Splice sites
5' ss Seq
CGTGTGAGT
5' ss Score
7.42
3' ss Seq
ACTCTTGTTGCTCTGTGCAGGGT
3' ss Score
8.4
Exon sequences
Seq C1 exon
CTCGGGCCGCGCTGGTGAAGTCGCGAGACATGCACTGGTCTCTCCTAGCTCAGCGGGGCCAGAGGGACGTCAGCCTCAGCTCACTGCGCATGCTGATTGTGGCCGATGGTGCCAACCCGT
Seq A exon
GTGAGTGAGCCTGTGTGCCCGGCGCATACCCCACACAGTGTCCCCTCCTGCAAACCAAAGTAGAATACACTGAGAAGCAAAATGGAGGCATTTTCACTGCCATTGTCATATAGATACACATGTCCCATCGTTTCTATGACACGGAACATCTTGGTGATTCACTGGTTTATCCCATGCATGTTTATTAGGCCACTAAATTTAAAAGCAATTTTAATATGCTTGATGAAAGGTACATGCCTTAATGAGAGTCATCTTTCTTAAGAAATTACCAGATTGTGCTGTGGCCTGGGGTTCCTGTTTCTCTTTAGGCCTCATCCCCACCCTCCTGCCCTTTGTCCTGGTGCCCCCACGTCTCTGGCTTCTGGCTTCACTTCTCCCACCAGGACCCAACCATTCTCCCTCCTGGTTTGCCTGGGTGTCCCCCACATCCTCCCAGGAGGAGCTCCCTATGGCTGCTGCCTGACCACGTAGGGCCTCCTGCGTACGGTGGTCTGAATGGGAACTGCTTTGTCAAGGCTGCACACGTGAGCTCTGGGGCCCAGGACTGTCCAGGGTCTGACTCAGTACCTCCTCTGGGGAAGCCTCAGGTGATGCTGGTCACACAGGGGCTCCTGTTGCAGCACACACCTGTTGACCAGGTATTAGGGGTTTTCTTGTTTGTTAACCTGCATCATTGTCTATGCACTGGAGACTACCCTGCATCAGAAGCTGATGTTTCATCTTATCCCCTCTCCAGTGTGGCCGACACCCCATCTCTTGGGAGGTCACCCCACCTTTGAGCACCCCCAGAGCCTCTCATTCTCTTGGTCCACACCTGAGCCAGGCAGGGCCTGCTTCTGGGTTCTGCAGCACTGCTCAGGTCTCTGCGTCTCCACCCCAGGCGCACCGCCACTCCGTGGTCCCCATGGTGGAGTCAGAGTGTGCACCTCCTCTCCAGTGCCTCTTCCCATGGCACTCCCCTGTTGCTGCACCTGATCCTTGCAGTGCCGTGCAGCTTGTCTCCCACCACATGCAGCACCTTCCTGTCCCTAGTGATGCCCCTTCTGCCCTTTGGAGCACCAGACCATCCATGGCTGTCTGATTTCCTTTAAAGATACCATCTTCCTTGAAGAACATGAAGTCTGAGGGTACCTGTGAAGGGGCCCCTTCCTTCTGCTGATGCAGCCCTGTGGTTCCGATGGCCGCAGGCTGCGCTAACTTGAGCATGTCCAGCCACCCCTTCCCTGCTGGCCCCCCAGTTAGTGCTGGCGTTCCACTCTTGTTGCTCTGTGCAG
Seq C2 exon
GGTCGATCTCCTCCTGTGACGCCTTCCTCAACGTCTTCCAGTCCAGAGGTCTGAGGCCAGAGGTCATCTGTCCTTGTGCAAGTTCTCCTGAGGCGCTGACTGTCGCCATCCGCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000160305-DIP2A:NM_001146114:14
Average complexity
IR-S
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.051
Domain overlap (PFAM):
C1:
PF0050123=AMP-binding=FE(8.4=100)
A:
NA
C2:
PF0050123=AMP-binding=FE(8.0=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
Associated events
Other assemblies
Conservation
Chicken
(galGal4)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CGCTGGTGAAGTCGCGAG
R:
GACAGTCAGCGCCTCAGGAG
Band lengths:
215-1489
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Genotype-Tissue Expression Project (GTEx)
- Autistic and control brains
- Pre-implantation embryo development
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)