RnoINT0047703 @ rn6
Intron Retention
Gene
ENSRNOG00000043212 | Dip2a
Description
disco-interacting protein 2 homolog A [Source:RGD Symbol;Acc:1582897]
Coordinates
chr20:13095791-13097662:+
Coord C1 exon
chr20:13095791-13095910
Coord A exon
chr20:13095911-13097547
Coord C2 exon
chr20:13097548-13097662
Length
1637 bp
Sequences
Splice sites
5' ss Seq
CATGTGAGT
5' ss Score
7.83
3' ss Seq
ACCTCTCGTGCTTTACACAGGGT
3' ss Score
8.75
Exon sequences
Seq C1 exon
CCCGGGCTGCCCTGGTGAAGTCCCGAGATATGCACTGGTCACTCTTGGCACAGCGAGGTCAGAGGGACGTCTGTCTCAGCTCTCTGCGTATGTTGATTGTGGCGGATGGCGCAAACCCAT
Seq A exon
GTGAGTAGACTGGGTAACCTAGGGTGGGTTTGGGGTTTTTGCACACACGGTTCTTGACTTGCCAGGAGGACCAAACAGCCTGTCGAGCTGGAACCTAATGTACAAAACTCGAGCTTTATCACTGCTTTGTTAAGTGACCTATAAGGAAGTACAAGTACCCTATAGTGTTCTGTGACATGCTGCCCCTTGTATTTATTAAGACATATGCATTTATTAAGACTCTAAATTTACAAGCAATTTTAATACAGTTGTCAAAACCTTTACTGGGAGTCATTGTCTTTAAGAAGTCAGTGGATTATGCTATAAATAGGGTCCCCAGTTTGTTAGGGACCTACTGAGCCTCTTGCCCCTTAGTGTTAGGCTCCCCTGATGTGGCTCTCAACCCCAACTTCCTTCACAGGGACCCAGCTATTCTTCCTCCATTTATCTCTGGCCAACTCCAAGCCCTCCTGGAGGAATGCCTGTGGCGTCTGCCTAGGCTGCGAGGACTCAGCTGTAAACAGTCCGAGAGCAGCTGCTTTTGTGGGAGCTGCCTAAGCTTCTTAGGTCCAGGACAGCCTGAGGCCTGGATCAGGCGTCCCCTAGGGGAGCTTGGAGTGACACTTGTTGAGCCAGGGATTTCTTCTGCAGCACAAATAGTTGCTCCTATTCTTCTGTGTACCCCGTCTTTCAGGAGAGCAGAGCAGGCAGACAGCACCTCTAGAAACTTCCTATTCTCTTGGTGTATATCTCAGACAAGCAAGGTGTCTCTTCCCAATATCCATGGCTACTCATGCCTTCTCATGCCCACAGCTGCCCACAGCCGCCCACAGCTGCCCACAGCCACCCTGGCTCTGCTTATGCCCGCAGCTGCAGTCCGTGATCTCTTGAGTACATCACTTCCTTGGAGTGTTTCCTTCCAGGAGATAAACGTTAGCGCTAATTTCTTTACCCGTCTCCTCCATCCACATTTCTGCAGGTACAGGACAGCTAGGCTTCCTTCATCAGCCTAACTTGCTCTTCACTTCCCGGCCCTTTATGATGCTCTACCCAGTCTTGGTACCACGGAGCAATCTGTCGCCTTCTTTCCTTAGGAGACACCTGCCTCCCCAGAGAATGTGAAAGCGGGGAACCTTGTAGATGCTTTTCCCCTTCTATGTACCCTTGTTGGGAGAGGTTTATAATGAAGCCCTAGAGTCACTGTGGCTATAGGGCGCAGAGCAGGCAGAGCCTCCTGAGGCCAAGTTCTCTAACACTCACTCACTGTTAAGGCCTGCCAGCCCTGGGTGACAGGAGTCTACCCAGAGGAGAGGACACTAGGGCAAGGCAGGACATCTTCCGTGGAGATGGAGATCACACATCTCTAAAGCTCTCGTAGGAGCTGCACTTGCTGGGCCACAGTAACCAACAAGACTGAAAACGGCCTGCTGTGAGGGGTCCAGACTCTTGCTTGTTGCCGAGCTGGAAACGATCATGTATGTCTTGTGGTAACTACTCCTACCCTTAAAGAAGCTGCCTTGCCAAACTGTAGTGGCAATCTTGTTAAAACAGGTTTATGTGCAGCTAGGACTCAGCCTGGCTGTCAGGTCAGCGTGATGCCTTACACACTGTGTGCTCTTGGCCTGCTGGCCCTCAGTCACCTCTCGTGCTTTACACAG
Seq C2 exon
GGTCAATATCTTCCTGCGATGCCTTCCTCAACGTCTTCCAGTCTAGAGGTCTGAGGCCAGAGGTCATCTGTCCTTGTGCCAGTTCTCCTGAGGCGCTAACAGTAGCCATCCGCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000043212:ENSRNOT00000066017:19
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.051
Domain overlap (PFAM):
C1:
PF0050123=AMP-binding=FE(8.4=100)
A:
NA
C2:
PF0050123=AMP-binding=FE(8.0=100)
Main Inclusion Isoform:
NA

Other Inclusion Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCTGCCCTGGTGAAGTCC
R:
CTGCGGATGGCTACTGTTAG
Band lengths:
230-1867
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]