MmuINT0049538 @ mm9
Intron Retention
Gene
ENSMUSG00000020231 | Dip2a
Description
DIP2 disco-interacting protein 2 homolog A (Drosophila) [Source:MGI Symbol;Acc:MGI:2385920]
Coordinates
chr10:75755057-75757358:-
Coord C1 exon
chr10:75757239-75757358
Coord A exon
chr10:75755172-75757238
Coord C2 exon
chr10:75755057-75755171
Length
2067 bp
Sequences
Splice sites
5' ss Seq
CATGTGAGT
5' ss Score
7.83
3' ss Seq
ACCTTTTATGCTTTACACAGGGT
3' ss Score
7.94
Exon sequences
Seq C1 exon
CCCGGGCTGCCCTGGTAAAGTCCCGAGATATGCACTGGTCGCTCTTGGCACAGCGAGGTCAGAGGGATGTCTGTCTCAGCTCTCTGCGCATGTTGATTGTGGCAGACGGCGCTAACCCAT
Seq A exon
GTGAGTAGGCTGGGTGACCGCGGGTGGGTTTGGTGGGTTTGGGGTATTGGCGCACGTGATGCTCGACTTGCCGGGAGGACTGAACAGCCTGTCGAGATGGAACCTATTGTACAAAATTCAGCTTCATCACTACTTTGATAAGTGTCCTATAAGGAAACGTCAGTGTCCTATTACGTTCTATGACATGTTGCCCCTTGTTAGTGACCCATTGGTGGGTCGCATATGTATTTATTAAGACTAAATTTACAAGCAATTTTAATACAATTGTCAGAACCTTTAGTGGGAACCATTGTCTTTAAGAGGTCAGAGGATTAAGCTATAAATAGGCTCTCCGATTTGTTAGGGACCTCTTGAACTCCTTGCCCTTTGGTGTTAGGCTCCCTTGATGTGGCTCTCAACTCCAACCGCCTTCACAGGGACCCAGCTATTCCTCCTCCATGTATCTCTGGCCAACCCCAACCCCTCCTGGAGGAATGACTGTGGCATCTGCCTAAGCAGTGAGGACGCTGCTGTCAACAGGGCTGTAACTGCTCTGGTGGCTGCGTGAACTTCTTAGGCCCAGGACTGCCTGAGGCCTGAATTGGGTGTCCTCTAGGGGAGCCCCAAGTGACACTAGTTGAGCAGGGGTTTCTTCTGCAGTACCAAATAGTTACCCCTATTCTTCTCTGTACCCCATCTTTCAGGGGAGCAGAACAGGCACGCAACACCCCTAAACACCTCTCATCCTCTTAGTGTACGTCTGAGACAAGCAAGGCCTCCTTCCCATATCCATGGATAACTCATGCCTTCTCACGCCCACAGCCGCCCACAGCCGCCCACAGCTGCCCACAGCCGCCCACAGCTGCCCACAGCTGGTCTGGCTCTCTGCTTATTCATTTAGCTGCCCACAGCCTCCCACAGCTGCCCAGGCTCTCTGTTTATACATTTAGCTGCCCATAGCCTCTTACAGCTGCCAACAGCTGCCCAGAACTACCCTAGCTCTCTGCTTATGCACTCAGCCACCCACACCCGCCCACAGCTGCCCACAGCCAGCCATATCCACCCACAGCTGCCCACAGCCACCCACAGCTTCCCTAGCTCTCTGCTTATGCACTCAGCTACCCACAGCTGCCCACAGCCATCCACATCCACTCACAGCTGCCCACAACCACCCACAGCCAGCCACATCTGCCCACAGCCACCCACAGCTGCCCTGGCTCTCTGCTTATGCACTCAGCTGCAGTCGGTGGTCACTTGAGCACATCGCTTCCTTCCAGCGTTTTCTTTCTAGAGATGAATGTTAGCCCTAATAGCTCTGCCCTGTCTCCTCCATCCACATCCCTCCAGGTACCAGAGAGCTAGCTTCCCTTCACAGGCCTTGATTTGCACTTCACTTACTGGTCCTTTATGATGTCGTATCCAGTCTTGGTAACACGGAACAGTCTGTTGCCTTCTTTCCTTAGGAGACACTTGCCCCCCAAAGAATGTGAAACTGGGAGCCCCTGTAGATGCCTGTTTCCCTTCTATGTACCTGTGTTGGGAGAGGTTTATAATGAAACCCTAGCGTCACCATGGCTGCAGGACCCTAGTTATTGGAGCCCTGAGCAGACGGAGCCTCCTTGTTGCCAAGTTCTCTAACACATCTGTTACATCTTGCCAGCCTTGAATGACTGAATGATGGAAGTCTACCCAAAGGAGAGGGCACAAGGGAGAGGCAGGACATCTTTGGTGAAGGTGTAGATCACACATCTCTAAAGCCACTCGCAGGAGCCGCACTTGTTGTCCCATCGGCCATCTGTGGTCAGGCCAGGCCTTGCTGGGCCACAGTAACAAACACAAGTCTAAAGCCAGGCCTCCTGTGAAAGATTTCCAGACTCTTACTTGTTGCTGAGCAGGAAATGATCGTGTGTGTCTTGTGGTGATCACTACTAACCTAAGAAGGACTGCTTTGCCAAATTGTAGCGGTGATCTTGTTAAAACAGGCTTATGTGCAGCCAGGACTCAGCCTGGCTGTCAGCAGTGTGATGCCTTACACACTGTGTGCTCTTGGCCCGCTGGCCCTCCAGTCACCTTTTATGCTTTACACAG
Seq C2 exon
GGTCAATATCTTCCTGCGATGCCTTCCTCAACGTCTTCCAGTCCAGAGGTCTGAGGCCAGAGGTCATCTGTCCTTGTGCCAGTTCTCCTGAGGCGCTGACAGTAGCCATCCGCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000020231-Dip2a:NM_001081419:16
Average complexity
IR-S
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.053
Domain overlap (PFAM):
C1:
PF0050123=AMP-binding=FE(8.4=100)
A:
NA
C2:
PF0050123=AMP-binding=FE(8.0=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
Associated events
Other assemblies
Conservation
Chicken
(galGal4)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
Other AS DBs: