DreINT0057231 @ danRer10
Intron Retention
Gene
ENSDARG00000062154 | dip2ca
Description
DIP2 disco-interacting protein 2 homolog Ca (Drosophila) [Source:ZFIN;Acc:ZDB-GENE-031118-39]
Coordinates
chr24:27089880-27090588:+
Coord C1 exon
chr24:27089880-27089973
Coord A exon
chr24:27089974-27090468
Coord C2 exon
chr24:27090469-27090588
Length
495 bp
Sequences
Splice sites
5' ss Seq
AAGGTCTGT
5' ss Score
6.43
3' ss Seq
TTGTCTGTTTTTGTGTTTAGGAA
3' ss Score
11.07
Exon sequences
Seq C1 exon
AGCGTCATGAATATGATGCATGTAATCAGCATCCCGTACTCCCTGATGAAGGTCAACCCTCTGTCCTGGATCCAGAAAGTCTGTCAATACAAAG
Seq A exon
GTCTGTCAATCACTTTTCACGTTAAATACATTTTGTTTTGTGTTAGAATGATTCATTTTAAGTCATATACTGCAAAAACAGTAATTATTACTAAAAAGATCATATTCCCGGTCTATCGAGTATGATAGAAACAACACAAATGTATATAAATTAGTACCAGTGAGCATTTTTGAAGCACATACAGTGCTTACCTACTGTATTTTGTATTTAAGAATATATATTTATGAAAGATTTACTTGCTTTGTTCATGCTTTATGCATTAATTGTCTATCTTTTGAAGCACAGAATGCAAAATCAATAGTGCGAACTTAAAATTTCATCTTAAATTCTAAATACAAAGGAAATCATATTCATACCAACAAATAGTCTTTTTTTATATACAGCAAAAGCTATACTAAATAATTATAGGGCTGAATTTCAAAGTTTTGTATGCATCCAAGATGGTGGTTCCTGTGATTTTTTTTTTATAGTAATCTTGTCTGTTTTTGTGTTTAG
Seq C2 exon
GAAAAGTGGCTTGTGTCAAGTCGAGGGATATGCACTGGGCTCTGGTCGCTCATCGAGATCAGAGAGACATCAACCTCAGCTCTCTGCGCATGCTGGTGGTGGCTGATGGATCCAACCCAT
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000062154:ENSDART00000137212:15
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0050123=AMP-binding=FE(6.5=100)
A:
NA
C2:
PF0050123=AMP-binding=FE(8.4=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GAATATGATGCATGTAATCAGCATCC
R:
ATGGGTTGGATCCATCAGCCA
Band lengths:
206-701
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]