RnoINT0047774 @ rn6
Intron Retention
Gene
ENSRNOG00000015288 | Dip2c
Description
disco-interacting protein 2 homolog C [Source:RGD Symbol;Acc:1560155]
Coordinates
chr17:63715094-63715441:+
Coord C1 exon
chr17:63715094-63715187
Coord A exon
chr17:63715188-63715321
Coord C2 exon
chr17:63715322-63715441
Length
134 bp
Sequences
Splice sites
5' ss Seq
AAGGTTGGT
5' ss Score
8.46
3' ss Seq
ACTTCTATTTTCCTTTGTAGCAA
3' ss Score
10.01
Exon sequences
Seq C1 exon
AGTGTCATGAACATGATGCACGTCATCAGCATCCCATACGCGCTGATGAAGGTAAACCCCCTCTCCTGGATCCAGAAGGTCTGCCAGTATAAAG
Seq A exon
GTTGGTCTCTCCCGGGCCTTCGGGTGATTTGGTGACAAGATAATTCACCATTCTCCATGAATCACAATTACCTGCCCTTTTCAGCTCCACATAGTCTGGCAGTGACACATGATAACTTCTATTTTCCTTTGTAG
Seq C2 exon
CAAAAGTGGCTTGTGTGAAATCAAGAGACATGCACTGGGCACTTGTAGCACACAGAGATCAGAGAGATGTCAACCTGTCCTCCCTGCGCATGTTAATAGTGGCCGATGGAGCAAATCCCT
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000015288:ENSRNOT00000020634:15
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0050123=AMP-binding=FE(6.5=100)
A:
NA
C2:
PF0050123=AMP-binding=FE(8.4=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TCATGAACATGATGCACGTCA
R:
AGGGATTTGCTCCATCGGCC
Band lengths:
210-344
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]