GgaINT0100235 @ galGal4
Intron Retention
Gene
ENSGALG00000006652 | DIP2C
Description
disco-interacting protein 2 homolog C [Source:HGNC Symbol;Acc:HGNC:29150]
Coordinates
chr2:9971309-9971639:-
Coord C1 exon
chr2:9971546-9971639
Coord A exon
chr2:9971429-9971545
Coord C2 exon
chr2:9971309-9971428
Length
117 bp
Sequences
Splice sites
5' ss Seq
AAGGTAAGG
5' ss Score
10.51
3' ss Seq
TCTTCCCATTCCTGTTGCAGCAA
3' ss Score
9.8
Exon sequences
Seq C1 exon
AGTGTCATGAACATGATGCATGTTATAAGTATTCCATATTCCTTAATGAAAGTGAATCCACTGTCATGGATACAAAAAGTATGTCAATACAAAG
Seq A exon
GTAAGGAACAAGAATATATGAAAGTACATTTGAAGGTCAAAATCTAAAGAACAAATTGTTTTTACAACTGTAGAGCTTTCACATGGTGCATTAGAAATCTTCCCATTCCTGTTGCAG
Seq C2 exon
CAAAAGTTGCCTGTGTAAAATCCAGAGACATGCACTGGGCATTGGTGGCACATCGAGATCAGAGAGACATCAACCTCTCCTCACTGCGAATGCTCATAGTGGCTGATGGTGCCAACCCAT
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000006652:ENSGALT00000010760:10
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0050123=AMP-binding=FE(6.5=100)
A:
NA
C2:
PF0050123=AMP-binding=FE(12.7=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]