MmuINT0049612 @ mm10
Intron Retention
Gene
ENSMUSG00000048264 | Dip2c
Description
disco interacting protein 2 homolog C [Source:MGI Symbol;Acc:MGI:1920179]
Coordinates
chr13:9575134-9575481:+
Coord C1 exon
chr13:9575134-9575227
Coord A exon
chr13:9575228-9575361
Coord C2 exon
chr13:9575362-9575481
Length
134 bp
Sequences
Splice sites
5' ss Seq
AAGGTTGGT
5' ss Score
8.46
3' ss Seq
ACTTCTATTTTCCTTTGTAGCAA
3' ss Score
10.01
Exon sequences
Seq C1 exon
AGTGTCATGAACATGATGCACGTCATCAGCATCCCATACTCGCTGATGAAGGTAAACCCCCTCTCCTGGATCCAGAAGGTCTGCCAGTATAAAG
Seq A exon
GTTGGTCTCTCCTGGGCTGCTGGGTGATTTGGTGACAAGATAATTCACCATTCCCTATGAATCACAATTACCTGTCTTTTTTAGCTACACACAGCCTGGCAGTGACACACGATAACTTCTATTTTCCTTTGTAG
Seq C2 exon
CAAAAGTGGCTTGTGTGAAATCAAGAGACATGCACTGGGCACTTGTAGCACACAGAGATCAGAGAGATGTCAACCTGTCCTCGCTGCGCATGTTAATAGTGGCTGATGGAGCAAATCCCT
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000048264:ENSMUST00000174552:15
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0050123=AMP-binding=FE(6.5=100)
A:
NA
C2:
PF0050123=AMP-binding=FE(8.4=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TCATGAACATGATGCACGTCA
R:
AGGGATTTGCTCCATCAGC
Band lengths:
210-344
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types