HsaINT0048155 @ hg38
Intron Retention
Gene
ENSG00000151240 | DIP2C
Description
disco interacting protein 2 homolog C [Source:HGNC Symbol;Acc:HGNC:29150]
Coordinates
chr10:384027-384639:-
Coord C1 exon
chr10:384546-384639
Coord A exon
chr10:384147-384545
Coord C2 exon
chr10:384027-384146
Length
399 bp
Sequences
Splice sites
5' ss Seq
AAGGTGGGT
5' ss Score
8.23
3' ss Seq
ATTTCTATTTTTCTTTTTAGCAA
3' ss Score
9.35
Exon sequences
Seq C1 exon
AGCGTCATGAACATGATGCATGTGATCAGCATCCCGTACTCGCTGATGAAGGTGAACCCTCTCTCCTGGATCCAGAAGGTCTGCCAGTACAAAG
Seq A exon
GTGGGTCTCGCCGGGCGCAGTGGCTCACACCTGTAATCCCAGCGCTTTAGGAGGCCAAAGCAGGTGGATCACCTGAGGTCAGGAGTTCCAGACCACCCGGGCCAATATGGAGAAACCCCGTTTCTACTAATAATACAAAAATTAGCCAGGCCTGATGGCGCATGCCTATAATCCCAGCTACTCGGGAGGTTGAGGCAGGAGAAATCTTGAACCCAGGAGAAGGAGGTTGCGGTGAGCCAAGATCACAAAAAAAAAAAAAAAAAAAAAAAAAAAAGGTTTGTGGGGGCTGGGTGACCAGTGATTCTTCACCCTTCCCCACTACTCACAATGATCTCTCTTTTGCAATAGGGGACGATCTGACGGTGGCACATGTTAACTTATTTCTATTTTTCTTTTTAG
Seq C2 exon
CAAAAGTGGCGTGTGTGAAATCGAGGGATATGCATTGGGCATTAGTAGCACACAGAGATCAGAGAGACATCAACCTCTCCTCTCTGCGAATGCTGATAGTGGCGGACGGCGCGAACCCCT
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000151240:ENST00000280886:15
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0050123=AMP-binding=FE(13.0=100)
A:
NA
C2:
PF0050123=AMP-binding=FE(16.8=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ATGATGCATGTGATCAGCATCCC
R:
CGTCCGCCACTATCAGCATTC
Band lengths:
190-589
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
- Pre-implantation embryo development