DreINT0058303 @ danRer10
Intron Retention
Gene
ENSDARG00000062630 | dnah9l
Description
dynein, axonemal, heavy polypeptide 9 like [Source:ZFIN;Acc:ZDB-GENE-050506-1]
Coordinates
chr6:10426962-10427337:-
Coord C1 exon
chr6:10427173-10427337
Coord A exon
chr6:10427088-10427172
Coord C2 exon
chr6:10426962-10427087
Length
85 bp
Sequences
Splice sites
5' ss Seq
CAGGTAAGA
5' ss Score
10.77
3' ss Seq
GTCCGTCTGTTGTGTAACAGGCA
3' ss Score
8.95
Exon sequences
Seq C1 exon
GTGACAAGACACTTACTGAAACTCTTTGACAATCTGGCTGACCTCAGCTTTAAGGAAGAGAAAGACAATGGAGAATTAGATCCCCAGACAACTATTGCCTTGGGAATGTACAGTAGAGAGGGAGAGTATGTGCCCTTCTCACAGCCCTGTGTGTGTGAGGGACAG
Seq A exon
GTAAGAGACATCTATACACACACACTCACACACTACATTCAAAATGAAATATTTACATTTTATTTGTCCGTCTGTTGTGTAACAG
Seq C2 exon
GCAGAGTGTTGGCTGAATGCTCTGGAGAAGGCCATGTGCTCTACTGTTCGGCAGGAGATCTCTGAAGCTGTGGCCGCATATGAAGACAAGCCAAGAGATCAGTGGCTGTTTGACTACCCAGCACAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000062630:ENSDART00000150908:21
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.036 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF083938=DHC_N2=FE(12.9=100)
A:
NA
C2:
PF083938=DHC_N2=PD(6.5=64.3)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Rat
(rn6)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GAGAGGGAGAGTATGTGCCCT
R:
TGTGCTGGGTAGTCAAACAGC
Band lengths:
175-260
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]