GgaINT0129588 @ galGal3
Intron Retention
Gene
ENSGALG00000007106 | DNAH17
Description
NA
Coordinates
chr18:9749954-9750697:+
Coord C1 exon
chr18:9749954-9750106
Coord A exon
chr18:9750107-9750571
Coord C2 exon
chr18:9750572-9750697
Length
465 bp
Sequences
Splice sites
5' ss Seq
CAGGTCAGT
5' ss Score
8.94
3' ss Seq
TCACAGATCCACACACACAGGTG
3' ss Score
3.09
Exon sequences
Seq C1 exon
GTGTCCCGTCACCTCTCGAAGCTGTTTGACAGTCTCGCTAAGCTGAAGTTCAAGATGAGCCCGGACAAAAAGCCGCTGAAGACGGCCCTGGGGATGTTCAGCAAAGAGGAGGAGTTTGTGCCGCTGAGCGCAGAGTGCGATCTGTCCGGGCAG
Seq A exon
GTCAGTGGGGCTGGGAGCTGCTGCACACGGGGTGGGGGCTGTGGAGCCTGGGCTGAGAAGAAGCCTAGAACAGAGCAATGGAGCCATGGAGAATGCCAAAGCACTGAGCCATGCAGCCCCTCGGGCGGTCCATCTGCTCACCCCCCCTTCGTGCTCCATAAACTGCAGTTTGCACTGTCAGATGGGCCTTTCATGCAGCCTTTTATCAAGTGGGGAGAGCAGTGCTGAGCAGTGCCTCAAGTGCCACCAGCACGGTGTGCAGGGCGAGCAGCTGCGTGCATCAGGCACGCATAGTGTGTGCTCCCTGGCCCTATGTCCCCTCCTTTGGGCACAGAGCAGCGGCTCTGGTCGCCATGCGGGCTGCTGTGAGCCTGCAGCAGGAGGGCAGTTCCATGCCAGCAGCTTAACCTGCATGTGGCCAGAACTGAGCAGGGCTGGGAAATGCTCACAGATCCACACACACAG
Seq C2 exon
GTGGAGGTGTGGCTGAACCGCGTGCTGGACAGCATGCGCTCCACGCTGCGGCACCTGATCCCCGAGGCCGTGGCCAGCTATGAGGACAAGCCACGGGAGCAGTGGGTGTTTGACTACCCGGCACAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000007106:ENSGALT00000011513:6
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF083938=DHC_N2=FE(13.3=100)
A:
NA
C2:
PF083938=DHC_N2=PD(7.2=64.3)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGTCCCGTCACCTCTCGAAG
R:
CTGTGCCGGGTAGTCAAACAC
Band lengths:
278-743
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]