MmuINT0050751 @ mm9
Intron Retention
Gene
ENSMUSG00000033987 | Dnahc17
Description
dynein, axonemal, heavy chain 17 [Source:MGI Symbol;Acc:MGI:1917176]
Coordinates
chr11:117952708-117954985:-
Coord C1 exon
chr11:117954833-117954985
Coord A exon
chr11:117952834-117954832
Coord C2 exon
chr11:117952708-117952833
Length
1999 bp
Sequences
Splice sites
5' ss Seq
CAGGTGAGC
5' ss Score
9.6
3' ss Seq
AGAGTGAGGTCTTTCCCCAGGTG
3' ss Score
4.4
Exon sequences
Seq C1 exon
GTGAGCCGCCACCTGTCCAAGCTCTTCGACAGCCTGTGTAAGCTCAAGTTCCGCCTTGACGCTAGTGGAAAGCCACTCAAGTTTGGGCTGGGGATGTACAGCAAGGAGGACGAGTTTGTGGACTTTGATAAGGAGTGTGACCTCTCCGGGCAG
Seq A exon
GTGAGCCTTGGAGGGGCGGGGTTGGCTGCATGCTGCCATGTGGTCATCCATCTGTCAAGGAGATGCTTGGGGGCCTCTTTTTATCTGATGTACCAGTGGAGGTCAGAGGACAACTTTCGGGAGTCGGTTCTCTCCTTCCACTGTGTGGGCCCCAGGGATAGAGCTCATGTTTGCCAGGCTTGGCAGCAAGCACCTTTACCTGCTGAGCCATCTCACCGGCTCCAACTTTGTTATAGAATCTATAGCACACAGCCTTCCCGTAGTGTGTGGTAAAGGAAGGGGCAAAGGAAGGAAGAAGAGGTAGGCTTGACCCATCTCTGAATTGTCACAGCTGGTGCAGAAGGGGGCTGTGCCACCTGAACAGGTTCTGAGCCCCTGTGCACAGGAAGTGGGCATGACGATTGAGTGGCTTCAGAGAAGCAATCGTGTGGCCCTGGTCCTCCTTCCAGCAAGCATGTCACCTACACTCGGTTTACCGGATCCTACCTAACGACAGCAAACTTCTCACTGGCCCTTCCCCGACCTCGCTGCCTGACCTCTGACCCAGCCACAGAGATGATATGGCCATTAGCCTGAAGGAAAATGCGTAGGGGCAAACCAGAACCTCTCACTAGAGTCTGGGCACTAGGGAGGTCAGAGGGGCTAGATGGGGCTTAGCCTCCCATTGCTCCTCTCAGAGGGACTCTGAGCAGCAGCAAGGTCCTTTCAGGGGAGTGACCGCTAGAAAAGACAGCCTGCTCCCCGACCCAGGTGCAGCAGGGAGAGCTGGGCTTGATCAGCTGTGGTGCTGGAGATGAGCCCAGCACCCCATGAGAGCAAGGTAGACAGTCTCCCACTGAGATAGACTTCTCTGCATGGCTGCCTGCTCCCTTCTCCGACTTAGGGATAACTGTATACTCCGCAAGCTTTTGCCAGGTGTCCCTGGCTTACTAAAGCGGCCTTTAGGTGGGGTCAGCTTTGGGGGCTTTTTAAAAACTTTATCCTAGCCGGACGTTGGTGCCGCATGCCTTTAATCCCAGCACTTGGGAGGCACAGGCAGGCAGATCTCTGAGTTCAAGGCCAGCCTGGTCTACAGAGTGAGTTCCAGGACAGCCAGGCCTATACAGAGAAACCCTGTCTGGGGGGGGGAGGGGGGACACGGACTTTATCCTAGTGTGTGTGTGGGGGGGAGACACTCACATGGAGGTTAGAGGACAATTTTGTGGACATGATTCTCTCCTTCCATTTTATGGGGATTCTGTGTATCGAACCTAGGTCGTCAGTCTCACACTACAAATGCCTTTACCAACTGAGGCATCTCATTGGCTCGGGTGGGTCGTCTTCTACTGCTCTATGGGTAACATTAGCATCTCTGTCCCTGACGCTGGAGGGAGCTTCCAAGTTCTTGGCATCTTGTTTAAAGAGTTGAAGCTCACACACAAGTGATAAAAACAGCGGGCGGGCAGAGGAGAGACTATTTAGAGACAAAGCAAAGGAATAGAGCAGACACACAGGGGCAGTGGGCACTAAAATAAGTGGCTCAGAGTTCTGGCTGGGTGCCAACACTGTTTCTGTGGATCCAGGTGGAGGAGGAGTTGGTTGTTAATCCTGGACTTGGAACATGTGCGTGCCCGATCGTGCAAACCCATGAGATGGCTAACAGGGGATTTTCCTGAAGAGTTGACTTGGGATCCATTCTGCCTCTCTCCCCATGTACCCCAAAACTGGTCCACACTGGGCTGGCTCACTGCTTCTGGATCTGGGATGCTTGCTTGGTCCCCGGAAGGAAGCTATTGAGTAGCCATAGATCAGAGCGATGGTGGCTTTGTTTAGAGAGGGGTGTGGGTGAAGCTCAGTGCAGGTGGAGATCCCAGGTGGCCAACTTCTTTGTTGGGAAAGGACTGGGCAGAGGTCAGGACAGGCAGGGTGGCTCCGCCTGCCCGCCAAGCTCACCTGCTTCGGGCGTACCAGTCACTGTGATGAGATATGCCTGTGAGGTCAGAGTGAGGTCTTTCCCCAG
Seq C2 exon
GTGGAAGTGTGGCTGAATCGCGTGCTGGACCGAATGCGCGCCACGTTGCGCCACGAAATTCCAGAAGCCGTGGTGACTTACGAGGAGAAACCGAGGGAACAATGGATCTTTGACTACCCGGCCCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000033987-Dnahc17:NM_001167746:31
Average complexity
IR-S
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF083938=DHC_N2=FE(12.1=100)
A:
NA
C2:
PF083938=DHC_N2=PD(6.5=64.3)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CACCTGTCCAAGCTCTTCGAC
R:
CTGGGCCGGGTAGTCAAAGAT
Band lengths:
270-2269
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types
Other AS DBs: